txid36911[Organism:noexp] - GEO DataSets

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Select item 2001512881.

Comparative transcriptomic analysis of the response of CUG-clade Candida species to phagocytosis

(Submitter supplied) Pathogenic Candida fungi are a leading cause of opportunistic, hospital-associated bloodstream infections with high mortality rates, typically in immunocompromised patients. Several species, including C. albicans, the most prevalent cause of infection, belong to the monophyletic CUG clade of yeasts. Much is known about the interaction of C. albicans with innate immune cells, which are crucial for controlling infection. more...

Organism:: Mus musculus; Candida dubliniensis; Candida albicans; Lodderomyces elongisporus; Candida parapsilosis; Clavispora lusitaniae; Candida tropicalis

Type:: Expression profiling by high throughput sequencing

12 related Platforms
24 Samples

Download data: TXT

Series

Accession:: GSE151288

ID:: 200151288

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001621512.

Transcriptional profiling of strains with different levels of Mrr1 activity in Candida lusitaniae (RNA-Seq)

(Submitter supplied) We sequenced mRNA from U04, U04 mrr1Δ and four strains complemented with different MRR1 alleles in the U04 mrr1Δ strain background to define the Mrr1 regulon in C. lusitaniae and assess how Mrr1 activity effects expression in three conditions: control, diamide and hydrogen peroxide.

Organism:: Clavispora lusitaniae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24692
54 Samples

Download data: CSV, FASTA, GTF, TSV

Series

Accession:: GSE162151

ID:: 200162151

SRA Run Selector

Select item 2001126363.

Diversity of cytosine methylation across the fungi tree of life

(Submitter supplied) Cytosine methylation is a conserved base modification, but explanations for its interspecific variation remain elusive. Only through taxonomic sampling of disparate groups can unifying explanations for interspecific variation be thoroughly tested. Here we leverage phylogenetic resolution of cytosine DNA methyltransferases (DNA MTases) and genome evolution to better understand widespread interspecific variation across 40 diverse fungal species. more...

Organism:: Plenodomus lingam; Candida albicans; Coemansia reversa; Postia placenta; Coemansia spiralis; Kirkomyces cordensis; Metarhizium robertsii; Pseudogymnoascus destructans; Phycomyces blakesleeanus; Fusarium fujikuroi; Neurospora crassa; Pleurotus ostreatus; Aureobasidium pullulans; Laccaria bicolor; Uncinocarpus reesii; Parasitella parasitica; Botrytis cinerea; Tilletiopsis washingtonensis; Saccharomyces cerevisiae; Aspergillus flavus; Coprinopsis cinerea; Clavispora lusitaniae; Lobosporangium transversale; Radiomyces spectabilis; Flammula alnicola; Cryptococcus neoformans var. grubii; Candidozyma auris; Pyricularia oryzae KJ201; Syncephalis fuscata; Podospora anserina; Phanerodontia chrysosporium; Agaricus bisporus; Mixia osmundae; Sporobolomyces roseus; Cordyceps militaris; Wolfiporia cocos; Spinellus fusiger; Hesseltinella vesiculosa; Microbotryum lychnidis-dioicae; Heterobasidion irregulare

Type:: Methylation profiling by high throughput sequencing; Third-party reanalysis

29 related Platforms
31 Samples

Download data: TSV, TXT, XLS

Series

Accession:: GSE112636

ID:: 200112636

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001114214.

Heterogeneous drug resistance in and antifungal naïve chronic infection

(Submitter supplied) Purpose: We compared the expression profile of three fluconazole resistant clinical isolates to two fluconazole sensitive clinical isolates, from the same patient, all containing mutation in the trancription factor Mrr1, to define the Mrr1 regulon in Candida lusitaniae.

Organism:: Clavispora lusitaniae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24692
10 Samples

Download data: TAB

Series

Accession:: GSE111421

ID:: 200111421

PubMed Full text in PMC Similar studies

Select item 2000716675.

Regional centromeres in Candida lusitaniae lack pericentromeric heterochromatin

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Clavispora lusitaniae

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL20764 GPL20765
10 Samples

Download data: NARROWPEAK, TXT

Series

Accession:: GSE71667

ID:: 200071667

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Select item 2000716596.

Regional centromeres in Candida lusitaniae lack pericentromeric heterochromatin (ChIP-seq)

(Submitter supplied) The goal of this study is to identifiy centromere locations of Candida lusitaniae through ChIP-Seq analysis. We applied ChIP-Seq on two centromere proteins: Cse4 and Mif2. After peak calling, we identified one peak in each of the 8 supercontigs of Candida lusitaniae which may represent the potential centromere location.

Organism:: Clavispora lusitaniae

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL20765
4 Samples

Download data: NARROWPEAK

Series

Accession:: GSE71659

ID:: 200071659

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000716587.

Regional centromeres in Candida lusitaniae lack pericentromeric heterochromatin (RNA-seq)

(Submitter supplied) We sequenced mRNA from wild type and Hst1 knock out strains of Candida lusitaniae to generate the gene expression profiles and studied the differentially expressed genes between the two conditions.

Organism:: Clavispora lusitaniae

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20764
6 Samples

Download data: TXT

Series

Accession:: GSE71658

ID:: 200071658

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000517948.

Transcriptional Profiling of the sexual life cycle of Candida lusitaniae.

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Clavispora lusitaniae; Clavispora lusitaniae ATCC 42720

Type:: Expression profiling by array

Platform:: GPL17847
70 Samples

Download data: GPR

Series

Accession:: GSE51794

ID:: 200051794

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000517939.

Candida lusitaniae a/alpha WT meiosis

(Submitter supplied) Transcriptional profiling of C. lusitaniae a/alpha WT cells on 0.37% PDA (potato dextrose agar) for 30 minutes (m), 2 hours (h), 4h, 8h, 12h, 18h, 24, and 30h hybridized against WT a/alpha cells in non-meiosis inducing conditions YPD (yeast peptone dextrose) for 2h

Organism:: Clavispora lusitaniae; Clavispora lusitaniae ATCC 42720

Type:: Expression profiling by array

Platform:: GPL17847
32 Samples

Download data: GPR

Series

Accession:: GSE51793

ID:: 200051793

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Select item 20005179210.

Candida lusitaniae STE12 meiosis

(Submitter supplied) Transcriptional profiling of C. lusitaniae a/alpha ste12Δ/ste12Δ deletion mutants on .37% PDA (potato dextrose agar) media for 0 hours (h), 12h, 28h, and 24 hours hybridized against WT a/alpha cells on YPD (yeast peptone dextrose) media for 2h

Organism:: Clavispora lusitaniae; Clavispora lusitaniae ATCC 42720

Type:: Expression profiling by array

Platform:: GPL17847
4 Samples

Download data: GPR

Series

Accession:: GSE51792

ID:: 200051792

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005179011.

Candida lusitaniae haploid nutrition

(Submitter supplied) Transcriptional profiling of C. lusitaniae WT a and WT alpha cells on 0.37% PDA (potato dextrose agar) for 30 minutes (m), 2 hours (h), or 24h hybridized against WT a and WT alpha cells in YPD (yeast peptone dextrose) for 2h

Organism:: Clavispora lusitaniae; Clavispora lusitaniae ATCC 42720

Type:: Expression profiling by array

Platform:: GPL17847
10 Samples

Download data: GPR

Series

Accession:: GSE51790

ID:: 200051790

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005178912.

Candida lusitaniae ime2Δ/ime2Δ a/alpha WT meiosis

(Submitter supplied) Transcriptional profiling of C. lusitaniae ime2Δ/ime2Δ a/alpha WT cells on 0.37% PDA (potato dextrose agar) for 0 hours, 12h, 18h and 24h hybridized against WT a/alpha cells in YPD (yeast peptone dextrose) for 4h

Organism:: Clavispora lusitaniae; Clavispora lusitaniae ATCC 42720

Type:: Expression profiling by array

Platform:: GPL17847
12 Samples

Download data: GPR

Series

Accession:: GSE51789

ID:: 200051789

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005178813.

Candida lusitaniae mating

(Submitter supplied) Transcriptional profiling of C. lusitaniae a and alpha cells mixed on 0.37% PDA (potato dextrose agar) for 0 hours (h) ,4h, and 12n hybridized against WT cells on YPD for 4 hours and also a and alpha ime2 deletion mutants mixed on 0.37% PDA for 4 hours hybridized against WT cells on YPD (yeast peptone dextrose) for 4h