GEO DataSets

(Submitter supplied) Analysis of gene expression level. The hypothesis tested in the present study that ClSnRK2.3 negatively regulated watermelon fruit development and ripening.

Organism:

Citrullus lanatus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28123

18 Samples

Download data: TXT

(Submitter supplied) cDNA libraries of Melon fruits produced in different locations in the USA

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

62 Samples

Download data: CSV

(Submitter supplied) Jiashi melon and 86-1 melon were inoculated with Alternaria alternata, and the difference of gene expression was analyzed after 0, 6, 12, 18 and 24 days storage.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33211

60 Samples

Download data: TXT

(Submitter supplied) Melon is a globally commercialized fruit, and Fusarium rot disease poses a significant threat to post-harvest losses. The conventional use of fungicides raises concerns about chemical residues, prompting exploration into alternative technologies such as Pulsed Light (PL). While PL has been effective in controlling infections in various fruits and vegetables, the precise physiological responses and molecular mechanisms in melon fruits remain incompletely understood. more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34242

18 Samples

Download data: TXT

(Submitter supplied) Watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai) is an important cucurbit crop grown worldwide. Watermelon fruit quality, fertility, and the seed setting rate are closely related to male flower development. In this study, the different developmental stages of flower buds of the watermelon variety Xinteda Zhengkang 9 were distinguished by cytological observation, and transcriptome sequencing analysis was performed subsequently. more...

Organism:

Citrullus lanatus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20225

12 Samples

Download data: XLS

(Submitter supplied) Strigolactone (SL) and auxin are two important phytohormones involved in plant root development, but whether they show synergistic or mutual promotion effects during adventitious root (AR) formation has not been adequately explored.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33469

9 Samples

Download data: TXT

(Submitter supplied) The physiological indicators, transcriptome, and metabolome of two melon varieties with contrasting chilling tolerance (‘162’, chilling-tolerant; ‘13-5A’ ,chilling-sensitive) were analyzed under chilling stress.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

12 Samples

Download data: TXT

(Submitter supplied) Purpose: the goals of this study are to provide a theoretical basis for the use of chitosan oligosaccharide to alleviate the damage caused by cold stress in cucumber growth and development.

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26594

12 Samples

Download data: TXT

(Submitter supplied) Cucumber is an important vegetable crop worldwide, which is mainly propagated by seed. The successful occurrence of double fertilization is the premise of seed production in angiosperms. Cucumber ALC homolog (CsALC) displayed a novel and positive function in pollen tube emergence process, and regulated female fertility by promoting CsRALF4/19 function during pollen tube guidance in cucumber.

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25280

6 Samples

Download data: FA, TXT

(Submitter supplied) To investigate transcript abundance of flavor-associated genes in fatty acid and amino acid pathways after chilling. We then performed gene expression profiling analysis using data obtained from RNA-seq of 3 different treatments [(A) stored at 4°C for 7 d (without chilling injury), and then transferred to room temperature (~22°C) for 1 d; (B) held at 4°C for 8 d until use (without chilling injury); (C) harvested on day 8 (8 d after the fruits of first two groups). more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

9 Samples

Download data: XLSX

(Submitter supplied) To analyze the molecular mechanism underlying flesh color formation in different color melon.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

18 Samples

Download data: TXT

(Submitter supplied) Previous study we have reported the cucumber TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) family gene BRANCHED1 (CsBRC1) as a main transcription factor functions to regulate shoot branching. Here, we found CsBRC1 (CsTCP18b in this study) had a paralogous gene CsTCP18a. To investigate whether the function of CsTCP18a was same as CsTCP18b, we carried out biochemical experiments and genetic transformation. The Real-Time PCR and in situ hybridization showed that CsTCP18a displayed different expression patterns in cucumber compared with CsTCP18b. more...

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16310

4 Samples

Download data: XLSX

(Submitter supplied) Analysis of small RNA expression level.

Organism:

Citrullus lanatus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL23842

26 Samples

Download data: XLSX

(Submitter supplied) Analysis of genome DNA methylation level

Organism:

Citrullus lanatus

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL28123

34 Samples

Download data: BEDGRAPH

(Submitter supplied) Analysis of gene expression level. The hypothesis tested in the present study was that 5-azacytidine affects fruit ripening.

Organism:

Citrullus lanatus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23842

30 Samples

Download data: XLSX

(Submitter supplied) Chayote (Sechium edule) fruits are rich in flavonoids, folate, and low-calorie food. However, studies about the flavonoids and regulatory mechanism of flavonoid synthesis in chayote fruits was still unclear. In present study, a transcriptome analysis and metabolite profiling of chayote fruits at three different storage stages were conducted to explore the flavonoid compositions and gene expression associated with flavonoid synthesis. more...

Organism:

Sicyos edulis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32715

9 Samples

Download data: FASTA, TXT

(Submitter supplied) Purpose: the goals of this study are to identify the GST gene and to analyse their function under cold stress

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26594

12 Samples

Download data: XLSX

(Submitter supplied) The successful fusion of sperms and eggs need firstly the reception of pollens by stigmatic papillae, and then the unobstructed transmitting tract (TT) providing an extension channel for pollen tubes carrying with sperm cells. However, the genes involved in transmitting tract specification and cavity formation in cucumber remained largely unknown. Here, we characterized the bHLH gene, Cucumis sativus SPATULA (CsSPT) and its redundant function with Cucumis sativus ALCATRAZ (CsALC) in TT development and stigma convergence in cucumber.

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26594

12 Samples

Download data: XLSX

(Submitter supplied) Purpose: The goals of this study are to compare The difference of RNA expression between Pumpkins seed coat and hulled-less Pumpkins seed coat. Methods:Using Trizol kit, total RNA was extracted from seed coats of squash with and without shells under the conditions of 5 DAP, 10 DAP and 20 DAP. Then, 1 µ g RNA was extracted from each sample using the Illumina Hiseq 2000 platform for sequencing.

Organism:

Cucurbita pepo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32300

18 Samples

Download data: TXT

(Submitter supplied) Purpose: To gain a better understanding of the molecular mechanisms that enable de novo AR primordia emergence upon waterlogging, the RNA sequencing-based transcriptomic responses of two contrasting cucumber genotypes, Zaoer-N (waterlogging tolerant) and Pepino (waterlogging sensitive), which differed in their abilities to form AR were compared. Conclusion: This research broadens our understanding of the mechanism underlying waterlogging-triggered ARs emergence, and provides valuable information for the breeding of cucumber with enhanced waterlogging tolerance.

Organism:

Cucumis sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26594

63 Samples

Download data: TXT