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Items: 20

1.

Deep sequencing, profiling and detailed annotation of miRNAs in Takifugu rubripes

(Submitter supplied) We performed extensive transcriptome analysis of the tiger pufferfish (Takifugu rubripes) using the next-generation sequencer SOLiD III, and profiled millions of small RNA sequences in somatic tissues and gonads, as well as identifying thousands of miRNAs. The number of miRNAs identified was the highest in fish species reported to date. We also report highly variable isomiR features.
Organism:
Takifugu rubripes
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19713
9 Samples
Download data: TXT
Series
Accession:
GSE65404
ID:
200065404
2.

miRNA expression profile and small RNA transcriptome in the Squalius alburnoides complex

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Danio rerio; Gallus gallus; Squalius alburnoides; Drosophila melanogaster; Rattus norvegicus; Takifugu rubripes; Squalius pyrenaicus; Caenorhabditis elegans; Homo sapiens; Mus musculus
Type:
Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL14672 GPL15754 GPL15755
8 Samples
Download data: TXT
Series
Accession:
GSE38799
ID:
200038799
3.

miRNA expression profile in the Squalius alburnoides complex

(Submitter supplied) The Squalius alburnoides complex (Steindachner) is one of the most intricate hybrid polyploid systems known in vertebrates. In this complex, the constant switch of the genome composition in consecutive generations, very frequently involving a change on the ploidy level, promotes repetitive situations of potential genomic shock. Previously in this complex, it was shown that in response to the increase in the genome dosage, triploid hybrids could regulate gene expression to a diploid state. more...
Organism:
Squalius pyrenaicus; Drosophila melanogaster; Rattus norvegicus; Takifugu rubripes; Danio rerio; Gallus gallus; Squalius alburnoides; Caenorhabditis elegans; Homo sapiens; Mus musculus
Type:
Non-coding RNA profiling by array
Platform:
GPL14672
4 Samples
Download data: TXT
Series
Accession:
GSE36894
ID:
200036894
4.

Ethanol alters microNA expression in zebrafish embryos

(Submitter supplied) Prenatal exposure to ethanol leads to a myriad of developmental disorders known as fetal alcohol spectrum disorder, often characterized by growth and mental retardation, central nervous system damage and specific craniofacial dysmorphic features. Although the exact mechanisms of ethanol toxicity are not well understood it is known that ethanol exposure during development affects the expression of several genes involved in cell cycle control, apoptosis and transcription. more...
Organism:
Drosophila melanogaster; Rattus norvegicus; Takifugu rubripes; Danio rerio; Gallus gallus; Caenorhabditis elegans; Homo sapiens; Mus musculus
Type:
Non-coding RNA profiling by array
Platform:
GPL14672
6 Samples
Download data: TXT
Series
Accession:
GSE32632
ID:
200032632
5.

miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana; Sorghum bicolor; Caenorhabditis briggsae; Caenorhabditis elegans; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Xenopus laevis; Xenopus tropicalis; Ateles geoffroyi; Gorilla gorilla; Bos taurus; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 4; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Tetraodon nigroviridis; Physcomitrella patens; Populus trichocarpa; Glycine max; Medicago truncatula; Gallus gallus; Pan paniscus; Ovis aries; Murid gammaherpesvirus 4; Oryza sativa; Saccharum officinarum; Bombyx mori; Lemur catta; Lagothrix lagotricha; Macaca nemestrina; Homo sapiens; Canis lupus familiaris; Sus scrofa; Human betaherpesvirus 5; Monodelphis domestica; Takifugu rubripes; Macaca mulatta polyomavirus 1; Zea mays; Danio rerio; Macaca mulatta; Pan troglodytes; Pongo pygmaeus; Gallid alphaherpesvirus 2; Schmidtea mediterranea
Type:
Expression profiling by array; Non-coding RNA profiling by array
Platforms:
GPL10558 GPL6844
16 Samples
Download data: GPR
Series
Accession:
GSE35921
ID:
200035921
6.

miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)

(Submitter supplied) Background: Similar to replicating myoblasts, many rhabdomyosarcoma cells express the myogenic determination gene MyoD. In contrast to myoblasts, rhabdomyosarcoma cells do not make the transition from a regulative growth phase to terminal differentiation. Previously we demonstrated that the forced expression of MyoD with its E-protein dimerization partner was sufficient to induce differentiation and suppress multiple growth-promoting genes, suggesting that the dimer was targeting a switch that regulated the transition from growth to differentiation. more...
Organism:
Populus trichocarpa; Glycine max; Bombyx mori; Lemur catta; Lagothrix lagotricha; Pan troglodytes; Sus scrofa; Human betaherpesvirus 5; Macaca mulatta polyomavirus 1; Physcomitrella patens; Drosophila melanogaster; Drosophila pseudoobscura; Macaca nemestrina; Pan paniscus; Canis lupus familiaris; Ovis aries; Rattus norvegicus; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4; Medicago truncatula; Sorghum bicolor; Zea mays; Caenorhabditis briggsae; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Ateles geoffroyi; Mus musculus; Human gammaherpesvirus 4; Human gammaherpesvirus 8; Saguinus labiatus; Schmidtea mediterranea; Arabidopsis thaliana; Oryza sativa; Saccharum officinarum; Caenorhabditis elegans; Anopheles gambiae; Apis mellifera; Danio rerio; Macaca mulatta; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Bos taurus; Gallid alphaherpesvirus 2; Macacine gammaherpesvirus 4; Tetraodon nigroviridis
Type:
Non-coding RNA profiling by array
Platform:
GPL6844
4 Samples
Download data: GPR
Series
Accession:
GSE35606
ID:
200035606
7.

Discovery of novel microRNAs in rat kidney using microarray analyses

(Submitter supplied) MicroRNAs are small non-coding RNAs that regulate a variety of biological processes. In the last version of the miRBase database (Release 17), 720 mouse microRNAs are accompanied by only 408 rat microRNAs. Given the importance of rat as a model organism, we used next generation sequencing and microarray technologies to discover novel microRNAs in rat kidneys.
Organism:
Danio rerio; Gallus gallus; Ornithorhynchus anatinus; Macaca mulatta; Pan paniscus; Equus caballus; Petromyzon marinus; Xenopus tropicalis; Ateles geoffroyi; Symphalangus syndactylus; Homo sapiens; Sus scrofa; Bos taurus; Mus musculus; Tetraodon nigroviridis; Oryzias latipes; Pan troglodytes; Pongo pygmaeus; Ovis aries; Taeniopygia guttata; Xenopus laevis; Macaca nemestrina; Canis lupus familiaris; Rattus norvegicus; Takifugu rubripes; Rhinopithecus bieti; Saguinus labiatus
Type:
Non-coding RNA profiling by array
Platform:
GPL14819
6 Samples
Download data: TXT
Series
Accession:
GSE33360
ID:
200033360
8.

AB SOLiD System 3.0 (Takifugu rubripes)

Organism:
Takifugu rubripes
1 Series
9 Samples
Download data
Platform
Accession:
GPL19713
ID:
100019713
9.

miRNAChip_MS_V1

(Submitter supplied) The spotted oligo library was the NCodeTM multi-species miRNA probe set V2 from Invitrogen. This library contains 1164 34-44mer unmodified DNA oligonucleotides targeting human, rat and mouse, Drosophila, C.elegans and zebrafish mature miRNA sequences from miRBase Sequence Database version 9.0. In addition, the mirVana miRNA Probe Set includes 24 probes targeting an exclusive set of newly identified zebrafish miRNAs, one positive control and several mismatch controls for screening 1- and 2-base sequence mismatches. more...
Organism:
Caenorhabditis elegans; Drosophila melanogaster; Danio rerio; Gallus gallus; Homo sapiens; Mus musculus; Rattus norvegicus; Takifugu rubripes
3 Series
10 Samples
Download data
Platform
Accession:
GPL14672
ID:
100014672
10.

LC Sciences_Vertebrate_microRNA_Version17 (MRA-1033)

(Submitter supplied) Platform table annotations based on miRBase release version 17 catalog number : MRA-1033 http://www.lcsciences.com/applications/transcriptomics/mirna-profiling/mirna/mirna-available-arrays/vertebrates-array-content/ Protocol: Arrays are made based µParaflo microfluidic technology.
Organism:
Petromyzon marinus; Danio rerio; Oryzias latipes; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Ornithorhynchus anatinus; Ateles geoffroyi; Macaca mulatta; Macaca nemestrina; Symphalangus syndactylus; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Canis lupus familiaris; Equus caballus; Sus scrofa; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Takifugu rubripes; Taeniopygia guttata; Rhinopithecus bieti; Saguinus labiatus; Tetraodon nigroviridis
1 Series
6 Samples
Download data: TXT
Platform
Accession:
GPL14819
ID:
100014819
11.

FHCRC miRNA Array v1.8.1

(Submitter supplied) The array contains microRNA probes for multiple organisms annotated in the miRBase database (Release 8.1). Protocol: The multi-organism array was manufactured by spotting the contents of v8.1 of the miRCURY LNA Array ready to spot probe set from Exiqon onto glass microscope slides.
Organism:
Physcomitrella patens; Populus trichocarpa; Arabidopsis thaliana; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Zea mays; Caenorhabditis briggsae; Caenorhabditis elegans; Bombyx mori; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Danio rerio; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Lemur catta; Ateles geoffroyi; Lagothrix lagotricha; Macaca mulatta; Macaca nemestrina; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Canis lupus familiaris; Sus scrofa; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Human betaherpesvirus 5; Human gammaherpesvirus 4; Gallid alphaherpesvirus 2; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Schmidtea mediterranea; Tetraodon nigroviridis; Macaca mulatta polyomavirus 1
2 Series
4 Samples
Download data
Platform
Accession:
GPL6844
ID:
100006844
12.

Testis

Organism:
Takifugu rubripes
Source name:
Testis
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595666
ID:
301595666
13.

Ovary

Organism:
Takifugu rubripes
Source name:
Ovary
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595665
ID:
301595665
14.

Slow muscle

Organism:
Takifugu rubripes
Source name:
Slow muscle
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595664
ID:
301595664
15.

Liver

Organism:
Takifugu rubripes
Source name:
Liver
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595663
ID:
301595663
16.

Heart

Organism:
Takifugu rubripes
Source name:
Heart
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595662
ID:
301595662
17.

Brain

Organism:
Takifugu rubripes
Source name:
Brain
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595661
ID:
301595661
18.

Eye

Organism:
Takifugu rubripes
Source name:
Eye
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595660
ID:
301595660
19.

Intestine

Organism:
Takifugu rubripes
Source name:
Intestine
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595659
ID:
301595659
20.

Fast muscle

Organism:
Takifugu rubripes
Source name:
Fast muscle
Platform:
GPL19713
Series:
GSE65404
Download data: TXT
Sample
Accession:
GSM1595658
ID:
301595658
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db=gds|term=txid31033[Organism:exp]|query=1|qty=58|blobid=NCID_1_354272798_130.14.22.215_9001_1508452213_1840007471_0MetA0_S_MegaStore_F_1|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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