txid29388[Organism:exp] - GEO DataSets

Select item 2001436001.

RNA sequencing of S. simiae CCM 7213T, S. capitis SK14 and S. epidermidis RP62A strains

(Submitter supplied) The goal of our study was to perform RNA sequencing of whole transcripts to determine and compare the real length of 3’UTRs among closely-related staphylococcal species. We found that most of the mRNAs encoding orthologous genes in staphylococcal species have 3’UTRs with different lengths in addition to sequence variation.

Organism:: Staphylococcus epidermidis; Staphylococcus simiae; Staphylococcus capitis

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL27999 GPL23256 GPL28000
3 Samples

Download data: BW

Series

Accession:: GSE143600

ID:: 200143600

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000572452.

Identification of Gram-positive bacteria using BC-GP assay

(Submitter supplied) Signal intensities of BC-GP array for 105 speimens The Verigene Gram-Positive Blood Culture (BC-GP) nucleic acid assay is an automated microarray-based test, which can detect 12 Gram-positive bacterial genes and 3 resistance determinants using blood culture broths. We investigated signal intensities of microarray spots, and reclassified undetermined results where the automated system failed and various errors were called in blood culture specimens and spiked samples.

Organism:: Staphylococcus; Streptococcus parasanguinis; Enterococcus gallinarum; Streptococcus mitis; Corynebacterium afermentans; Streptococcus australis; Streptococcus gallolyticus; Staphylococcus simulans; Staphylococcus hominis; Streptococcus; Streptococcus pyogenes; Streptococcus anginosus; Enterococcus faecium; Bacillus licheniformis; Listeria; Listeria monocytogenes; Staphylococcus lugdunensis; Staphylococcus caprae; Staphylococcus saprophyticus; Escherichia coli; Klebsiella pneumoniae; Micrococcus; Micrococcus luteus; Staphylococcus aureus; Streptococcus salivarius; Streptococcus agalactiae; Streptococcus dysgalactiae; Enterococcus faecalis; Staphylococcus capitis; Streptococcus anginosus group; Leuconostoc lactis; Staphylococcus epidermidis; Staphylococcus haemolyticus; Streptococcus gordonii; Streptococcus thermophilus; Streptococcus pneumoniae; Corynebacterium striatum; Streptococcus constellatus