GSM790073[Accession] - GEO DataSets

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Items: 3

Select item 2000318571.

Expression analysis of RCc3:OsNAC6 and GOS2:OsNAC6 transgenic rice plants

(Submitter supplied) For identification of genes up-regulated in RCc3:OsNAC6, GOS2:OsNAC6 plants, total RNA (100 μg) was prepared from root tissues of 14-d-old transgenic and non-transgenic rice seedlings (Oryza sativa cv Nipponbare) grown under normal growth conditions.

Organism:: Oryza sativa

Type:: Expression profiling by genome tiling array

Platform:: GPL7344
6 Samples

Download data: PAIR, PROBE

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Accession:: GSE31857

ID:: 200031857

Analyze with GEO2R

Select item 1000073442.

Rice NimbleGen 390K tiling array (2006-11-14_ggb_rap1_3tile_101706)

(Submitter supplied) Rice genome build information requested but not provided. Protocol: The profiling was conducted with the Rice 3'Tiling Microarray designed from 27,448 genes deposited at IRGSP, RAP1 database (http://rapdb.lab.nig.ac.jp). Among these, 20,507 genes were from representative RAP1 sequences with cDNA/EST supports and 6,941 genes were predicted without cDNA/EST supports. Ten 60-nt long probes were designed from each gene starting 60 bp ahead the end of stop codon and with shifting 10 bp so 10 probes cover 150 bp in the 3' region of the gene. more...