GEO DataSets

(Submitter supplied) The identification of processes activated by specific microbes during microbiota colonization of plant roots has been hampered by technical constraints in metatranscriptomics. These include lack of reference genomes, high representation of host or microbial rRNA sequences in datasets, or difficulty to experimentally validate gene functions. Here, we recolonized germ-free Arabidopsis thaliana with a synthetic, yet representative root microbiota comprising 106 genome-sequenced bacterial and fungal isolates. more...

Organism:

unidentified soil bacteria; Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL33384 GPL21179

6 Samples

Download data: FASTA, TAR