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Items: 4

1.

Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [RNA-seq]

(Submitter supplied) CTCF plays an important role in 3D genome organization by adjusting insulation at TAD boundaries, where clustered CBS (CTCF-binding site) elements are often arranged in tandem array with a complex divergent or convergent orientation. Here using cPcdh and HOXD loci as a paradigm, we look into the clustered CTCF TAD boundaries and find that, counterintuitively, outward-oriented CBS elements are crucial for inward enhancer-promoter interactions as well as for gene regulation. more...
Organism:
Homo sapiens; Mus musculus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL24247 GPL17021 GPL24676
156 Samples
Download data: FPKM_TRACKING, TXT
Series
Accession:
GSE225162
ID:
200225162

PubMed Full text in PMC Similar studies

2.

Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus; Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing
4 related Platforms
571 Samples
Download data: BEDGRAPH, FPKM_TRACKING, WIG
Series
Accession:
GSE210817
ID:
200210817

PubMed Full text in PMC Similar studies

3.

Illumina NovaSeq 6000 (Mus musculus)

Organism:
Mus musculus
17686 Series
743167 Samples
Download data
Platform
Accession:
GPL24247
ID:
100024247

4.

RNA_fg_del_rep1

Organism:
Mus musculus
Source name:
cortex
Platform:
GPL24247
Series:
GSE210817 GSE225162
Download data: FPKM_TRACKING
Sample
Accession:
GSM7040354
ID:
307040354

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db=gds|term=GSM7040354[Accession]|query=1|qty=3|blobid=MCID_685728eba711e52e1adbfa1b|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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