GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array; Expression profiling by array

Platforms:

GPL10686 GPL10689

12 Samples

Download data: CALLS, GFF, PAIR

(Submitter supplied) In diverse eukaryotes, constitutively silent sequences, such as transposons and repeats, are marked by methylation at histone H3 lysine 9 (H3K9me). Despites the conservation and importance in the genome integrity, mechanisms to exclude H3K9m from active genes remained largely unexplored. Here we show in Arabidopsis that the exclusion depends on a histone demethylase gene, IBM1 (increase in BONSAI methylation); loss-of-function ibm1 mutation caused ectopic H3K9me in thousands of genes, which accompanies genic DNA methylation at non-CG sites. more...

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL10686

6 Samples

Download data: GFF, PAIR

(Submitter supplied) The 2.1M HD2 array is custom-made by NimbleGen. The array covers entire genome of A. thaliana. BUILD: TAIR genome release TAIR8 Accession numbers of genome sequences used to make HD2 array: chromosome 1:NC_003070.6 chromosome 2:NC_003071.4 chromosome 3:NC_003074.5 chromosome 4:NC_003075.4 chromosome 5:NC_003076.5 NimbleGen description files linked below: 2008-08-06_RDKK096_Atha_CGH_HX1a.ndf 2008-08-06_RDKK096_Atha_CGH_HX1a.pos Protocol: see manufacturer's web site www.nimblegen.com

Organism:

Arabidopsis thaliana

2 Series

6 Samples

Download data: NDF, POS