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Items: 3

1.

NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements

(Submitter supplied) Promoters and enhancers are key cis-regulatory elements, but how they operate to generate cell-type-specific transcriptomes is not fully understood. We developed a simple and robust approach to sensitively detect 5’-ends of nascent RNAs (NET-CAGE) in diverse cells and tissues, including unstable transcripts such as enhancer-derived RNAs. We studied RNA synthesis and degradation at the transcription start site (TSS) level, characterizing the impact of differential promoter usage on transcript stability. more...
Organism:
Homo sapiens; Mus musculus
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL16791 GPL19057
144 Samples
Download data: BED
Series
Accession:
GSE118075
ID:
200118075

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2.

Illumina NextSeq 500 (Mus musculus)

Organism:
Mus musculus
11020 Series
309639 Samples
Download data
Platform
Accession:
GPL19057
ID:
100019057

3.

Nascent_RNA-seq_kidney_biologicalRep2

Organism:
Mus musculus
Source name:
Kidney
Platform:
GPL19057
Series:
GSE118075
Download data
Sample
Accession:
GSM3318278
ID:
303318278

SRA Run Selector

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db=gds|term=GSM3318278[Accession]|query=1|qty=3|blobid=MCID_687194e207a463b5fbebcb30|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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