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Items: 3

1.

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation

(Submitter supplied) De novo DNA methylation (DNAme) occurs coincident with transcription during mouse oogenesis. As many oocyte transcripts originate in Long Terminal Repeats (LTRs), which are divergent across species, we examined whether polymorphic LTR-initiated transcription units (LITs) shape the oocyte methylome. We identified thousands of syntenic regions in mouse, rat and human, including CpG islands (CGIs), that show divergent DNAme associated with polymorphic LITs. more...
Organism:
Mus musculus; Rattus norvegicus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL19057 GPL18694 GPL20084
10 Samples
Download data: BW
Series
Accession:
GSE112622
ID:
200112622

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Rattus norvegicus)

Organism:
Rattus norvegicus
334 Series
6790 Samples
Download data
Platform
Accession:
GPL20084
ID:
100020084

3.

SpragueDawley_oocyte_RNAseq_rep1

Organism:
Rattus norvegicus
Source name:
GVO
Platform:
GPL20084
Series:
GSE112622
Download data: BW
Sample
Accession:
GSM3074500
ID:
303074500

SRA Run Selector

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db=gds|term=GSM3074500[Accession]|query=1|qty=3|blobid=MCID_686f25ff07a463b5fb2db7ce|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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