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Items: 3

1.

Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity

(Submitter supplied) Sequence-specific transcription factors (TFs) regulate gene expression by binding to cognate motifs in promoters and enhancers. However, predicting genomic TF binding events and their quantitative contribution to expression remains a major challenge. In principle, the binding and enhancer activity of specific sites in vivo might depend on: (i) latent properties of the motif instance, (ii) cooperative interactions with other TFs that bind in the immediate vicinity, and (iii) the chromatin state of the sites in the genome. more...
Organism:
Mus musculus; synthetic construct
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
4 related Platforms
21 Samples
Download data: TXT
Series
Accession:
GSE84888
ID:
200084888
2.

Illumina MiSeq (synthetic construct)

Organism:
synthetic construct
104 Series
1240 Samples
Download data
Platform
Accession:
GPL17769
ID:
100017769
3.

Pool5_barcodes

Organism:
synthetic construct
Source name:
plasmid DNA
Platform:
GPL17769
Series:
GSE84888
Download data: TXT
Sample
Accession:
GSM2253165
ID:
302253165
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Supplemental Content

db=gds|term=GSM2253165[Accession]|query=1|qty=3|blobid=MCID_67e30fed7ec86104c28758e8|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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