GSM1394773[Accession] - GEO DataSets

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Items: 3

Select item 2000578351.

Comparison of microarray and RNA sequencing platforms for profiling microRNAs in formalin-fixed, paraffin-embedded human lung adenocarcinoma specimens

(Submitter supplied) MicroRNAs are useful biomarkers for various disease states, and their preservation in formalin-fixed, paraffin-embedded (FFPE) tissue makes them particularly useful for clinicogenetic studies. Although global microRNA expression in FFPE samples is routinely measured with microarrays, the utility of RNA sequencing for such profiling has yet to be established. In this study, to appraise the suitability of RNA sequencing, microRNAs in RNA from pathologic stage I lung adenocarcinoma FFPE samples were quantified with 8x60K Agilent® SurePrint™ G3 Human miRNA 8x60k (release 16.0) microarray and Illumina® HiSeq™ 2000 sequencing platforms.

Organism:: Homo sapiens

Type:: Non-coding RNA profiling by array

Platform:: GPL15019
16 Samples

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Accession:: GSE57835

ID:: 200057835

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000150192.

Agilent-031181 Unrestricted_Human_miRNA_V16.0_Microarray 030840 (miRBase release 14.0 miRNA ID version)

(Submitter supplied) Feature Number version of this Array is GPL15018 Human and human viral miRNAs Arrays of this design have barcodes that begin with 16031181 or 2531181. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. more...