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Items: 5

1.

Genome-wide identification of CCA1-bound genes in Arabidopsis by ChIP-Seq

(Submitter supplied) LHY and CCA1 encode single MYB transcription factors, involved in circadian clock. However, direct target genes of LHY and CCA1 in a genomic scale were largely unknown. To reveal bound genes by CCA1, chimeric protein CCA1-FLAG was expressed under CCA1 promoter in cca1 lhy (CCA1pro:CCA1-FLAG/ cca1 lhy). ChIP was performed using anti-FLAG antibody (F3165; SIGMA), which was bound to Dynabeads Protein G (100-03D; Life Technologies), and ChIP DNA were analyzed by IonPGM or Illumina GAII.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL9302 GPL19056
2 Samples
Download data: BED
Series
Accession:
GSE67903
ID:
200067903
2.

Ion Torrent PGM (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
2 Series
7 Samples
Download data
Platform
Accession:
GPL19056
ID:
100019056
3.

Illumina Genome Analyzer II (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
86 Series
566 Samples
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Platform
Accession:
GPL9302
ID:
100009302
4.

CCA1-ChIP_IonPGM

Organism:
Arabidopsis thaliana
Source name:
CCA1pro:CCA1-FLAG cca1 lhy
Platform:
GPL19056
Series:
GSE67903
Download data: BED
Sample
Accession:
GSM1657732
ID:
301657732
5.

CCA1-ChIP_Illumina

Organism:
Arabidopsis thaliana
Source name:
CCA1pro:CCA1-FLAG cca1 lhy
Platform:
GPL9302
Series:
GSE67903
Download data: BED
Sample
Accession:
GSM1657733
ID:
301657733
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Supplemental Content

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