GSE44835[Accession] - GEO DataSets - NCBI

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Select item 2000448351.

Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life

(Submitter supplied) Many animal species employ a chromosome-based mechanism of sex determination, which has led to coordinate evolution of dosage compensation systems. Dosage compensation not only corrects the imbalance in the number of X-chromosomes between the sexes, but is also hypothesized to correct dosage imbalance within cells due to mono-allelic X expression and bi-allelic autosomal expression, by upregulating X-linked genes (termed ‘Ohno’s hypothesis’). more...

Organism:: Mus musculus; Mus musculus x Mus spretus

Type:: Genome binding/occupancy profiling by genome tiling array

Platforms:: GPL16733 GPL10129 GPL16143
25 Samples

Download data: PAIR

Series

Accession:: GSE44835

ID:: 200044835

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000167332.

NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design

(Submitter supplied) Promoter tiling array using NimbleGen platform. Mouse MM8 build. Probe length 50-75bp isothermal. Tiled regions are 8200bp upstream and 3000bp downstream of 5 prime ends of genes as annotated in MM8. Protocol: http://www.nimblegen.com

Organism:: Mus musculus

4 Series
14 Samples

Platform

Accession:: GPL16733

ID:: 100016733

Select item 1000161433.

NimbleGen Mouse 2.1M deluxe promoter array (ver. 2)

(Submitter supplied) 2.1 million probes (50-70nt long) covering annotate promoter regions as well as CpG islands across the mouse genome (mm9 build).

Organism:: Mus musculus

6 Series
35 Samples

Download data: NDF, POS

Platform

Accession:: GPL16143

ID:: 100016143

Select item 1000101294.

NimbleGen Mouse 2.1 M array 10 of 10

(Submitter supplied) 2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp Protocol: standard NimbleGen protocol, see manufacturer's web site www.nimblegen.com

Organism:: Mus musculus

7 Series
33 Samples

Platform

Accession:: GPL10129

ID:: 100010129

Select item 3010922245.

CD15ES_PolIIS5p_genome tiling

Organism:: Mus musculus x Mus spretus

Source name:: PolIIS5p ChIP DNA from mouse female CD15 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092224

ID:: 301092224

Select item 3010922236.

CD15ES_PolII_genome tiling

Organism:: Mus musculus x Mus spretus

Source name:: PolII ChIP DNA from mouse female CD15 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092223

ID:: 301092223

Select item 3010922227.

PGK12.1ES_H4K16ac_genome tiling

Organism:: Mus musculus

Source name:: H4K16ac ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092222

ID:: 301092222

Select item 3010922218.

PGK12.1ES_H3K36me3_genome tiling

Organism:: Mus musculus

Source name:: H3K36me3 ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092221

ID:: 301092221

Select item 3010922209.

PGK12.1ES_H2AZac_genome tiling

Organism:: Mus musculus

Source name:: H2AZac ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092220

ID:: 301092220

Select item 30109221910.

PGK12.1ES_H2AZ_genome tiling

Organism:: Mus musculus

Source name:: H2AZ ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092219

ID:: 301092219

Select item 30109221811.

PGK12.1ES_MOF_genome tiling

Organism:: Mus musculus

Source name:: MOF ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092218

ID:: 301092218

Select item 30109221712.

PGK12.1ES_PolIIS5p_genome tiling

Organism:: Mus musculus

Source name:: PolIIS5p ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092217

ID:: 301092217

Select item 30109221613.

PGK12.1ES_PolIIS2p_genome tiling

Organism:: Mus musculus

Source name:: PolIIS2p ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL10129
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092216

ID:: 301092216

Select item 30109224014.

WD44ES_MOF_promoter

Organism:: Mus musculus

Source name:: MOF ChIP DNA from mouse male WD44 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092240

ID:: 301092240

Select item 30109223915.

WD44ES_PolII-S5p_promoter

Organism:: Mus musculus

Source name:: PolIIS5p ChIP DNA from mouse male WD44 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092239

ID:: 301092239

Select item 30109223516.

PGK12.1ES_MOFRNAi_H4K16ac_promoter

Organism:: Mus musculus

Source name:: H4K16ac ChIP DNA from mouse female PGK12.1 ES cells treated by MOF siRNAs (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092235

ID:: 301092235

Select item 30109223417.

PGK12.1ES_H4K16ac_promoter

Organism:: Mus musculus

Source name:: H4K16ac ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092234

ID:: 301092234

Select item 30109223318.

PGK12.1ES_H3ac_promoter

Organism:: Mus musculus

Source name:: H3ac ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092233

ID:: 301092233

Select item 30109223219.

PGK12.1ES_H3K4me3_promoter

Organism:: Mus musculus

Source name:: H3K4me3 ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092232

ID:: 301092232

Select item 30109223120.

PGK12.1ES_H3_promoter

Organism:: Mus musculus

Source name:: H3 ChIP DNA from mouse female PGK12.1 ES cells (channel 1) ChIP input DNA (channel 2)

Platform:: GPL16733
Series:: GSE30761 GSE44835

Download data: PAIR

Sample

Accession:: GSM1092231

ID:: 301092231

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