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Items: 7

1.

Effects of ADARs on small RNA processing pathways in C. elegans

(Submitter supplied) Adenosine deaminases that act on RNA (ADARs) are RNA editing enzymes that convert adenosine to inosine in double-stranded RNA (dsRNA). To evaluate effects of ADARs on small RNAs that derive from dsRNA precursors, we performed deep-sequencing, comparing small RNAs from wildtype and ADAR mutant C. elegans. While editing in small RNAs was rare, at least 40% of microRNAs had altered levels in at least one ADAR mutant strain, and miRNAs with significantly altered levels had mRNA targets with correspondingly affected levels. more...
Organism:
Caenorhabditis elegans
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9269
5 Samples
Download data: TAR
Series
Accession:
GSE28888
ID:
200028888
2.

Illumina Genome Analyzer II (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
92 Series
458 Samples
Download data
Platform
Accession:
GPL9269
ID:
100009269
3.

adr-1;adr-2 mutant small RNAs

Organism:
Caenorhabditis elegans
Source name:
Whole worm
Platform:
GPL9269
Series:
GSE28888
Download data: TAR
Sample
Accession:
GSM715834
ID:
300715834
4.

adr-2 mutant small RNAs

Organism:
Caenorhabditis elegans
Source name:
Whole worm
Platform:
GPL9269
Series:
GSE28888
Download data: TAR
Sample
Accession:
GSM715833
ID:
300715833
5.

adr-1 mutant small RNAs

Organism:
Caenorhabditis elegans
Source name:
Whole worm
Platform:
GPL9269
Series:
GSE28888
Download data: TAR
Sample
Accession:
GSM715832
ID:
300715832
6.

Wild-type small RNAs Sample 2

Organism:
Caenorhabditis elegans
Source name:
Whole worm
Platform:
GPL9269
Series:
GSE28888
Download data: TAR
Sample
Accession:
GSM715831
ID:
300715831
7.

Wild-type small RNAs Sample 1

Organism:
Caenorhabditis elegans
Source name:
Whole worm
Platform:
GPL9269
Series:
GSE28888
Download data: TAR
Sample
Accession:
GSM715830
ID:
300715830
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Supplemental Content

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