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Phylogenetic, microbiological and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor

Phylogenetic, microbiological and comparative genomic analysis was used to examine the diversity among members of the genus Caldicellulosiruptor with an eye towards the capacity of these extremely thermophilic bacteria for degrading the complex...

Species: Caldicellulosiruptor bescii; Caldicellulosiruptor kronotskyensis; Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor hydrothermalis; Caldicellulosiruptor lactoaceticus; Caldicellulosiruptor owensensis; Caldicellulosiruptor kristjanssoniiType: Genome variation profiling by array

Dataset: GSE23606

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Items: 8

1.

Phylogenetic, microbiological and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor

(Submitter supplied) Phylogenetic, microbiological and comparative genomic analysis was used to examine the diversity among members of the genus Caldicellulosiruptor with an eye towards the capacity of these extremely thermophilic bacteria for degrading the complex carbohydrate content of plant biomass. Seven species from this genus (C. saccharolyticus, C. bescii (formerly Anaerocellum thermophilum), C. hydrothermalis, C. more...
Organism:
Caldicellulosiruptor bescii; Caldicellulosiruptor kronotskyensis; Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor hydrothermalis; Caldicellulosiruptor lactoaceticus; Caldicellulosiruptor owensensis; Caldicellulosiruptor kristjanssonii
Type:
Genome variation profiling by array
Platform:
GPL6681
6 Samples
Download data: CSV
Series
Accession:
GSE23606
ID:
200023606
2.

NCSU_Caldicellulosiruptor saccharolyticus_3K array_version 1

(Submitter supplied) A DNA microarray was designed and constructed based on 2793 protein-coding sequences in the C. saccharolyticus genome obtained from the Department on Energy's Joint Genomes Institute (http://genome.ornl.gov/microbial/csac). OligoArray 2.0 (Rouillard, 2003) was used to generate one 60-mer oligonucleotide probe sequence for each open reading frame. The probes were synthesized (Integrated DNA Technologies, IA), re-suspended in 50% DMSO, and printed onto Ultragap microarray slides (Corning, NY) using a QArrayMini arrayer (Genetix, UK). more...
Organism:
Caldicellulosiruptor saccharolyticus
9 Series
42 Samples
Download data
Platform
Accession:
GPL6681
ID:
100006681
3.

C. owensensis versus C. saccharolyticus

Organism:
Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor owensensis
Source name:
C. owensensis (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578920
ID:
300578920
4.

C. lactoaceticus versus C. saccharolyticus

Organism:
Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor lactoaceticus
Source name:
C. lactoaceticus (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578919
ID:
300578919
5.

C. kronotskyensis versus C. saccharolyticus

Organism:
Caldicellulosiruptor kronotskyensis; Caldicellulosiruptor saccharolyticus
Source name:
C. kronotskyensis (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578918
ID:
300578918
6.

C. kristjanssonii versus C. saccharolyticus

Organism:
Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor kristjanssonii
Source name:
C. kristjanssonii (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578917
ID:
300578917
7.

C. hydrothermalis versus C. saccharolyticus

Organism:
Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor hydrothermalis
Source name:
C. hydrothermalis (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578916
ID:
300578916
8.

C. bescii versus C. saccharolyticus

Organism:
Caldicellulosiruptor bescii; Caldicellulosiruptor saccharolyticus
Source name:
C. bescii (channel 1) C. saccharolyticus (channel 2)
Platform:
GPL6681
Series:
GSE23606
Download data: CSV
Sample
Accession:
GSM578915
ID:
300578915
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Supplemental Content

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