GSE20939[Accession] - GEO DataSets - NCBI

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Select item 2000209391.

Genetic and Epigenetic Somatic Alterations in Head and Neck Squamous Cell Carcinomas Are Globally Coordinated but Not Locally Targeted (Affymetrix Copy Number)

(Submitter supplied) Solid tumors, including head and neck squamous cell carcinomas (HNSCC), arise as a result of genetic and epigenetic alterations in a sustained stress environment. Since it has been hypothesized that epigenetic alterations may act by providing the second carcinogenic hit in gene silencing, we sought to identify genome-wide DNA copy number alterations and CpG dinucleotide methylation events and examine the global/local relationships between these types of alterations in HNSCC. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; SNP genotyping by SNP array

Platforms:: GPL3720 GPL3718
76 Samples

Download data: CEL, CHP, TXT

Series

Accession:: GSE20939

ID:: 200020939

PubMed Full text in PMC Similar studies

Select item 1000037202.

[Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). more...

Organism:: Homo sapiens

150 Series
9570 Samples

Platform

Accession:: GPL3720

ID:: 100003720

Select item 1000037183.

[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). more...

Organism:: Homo sapiens

193 Series
11192 Samples

Platform

Accession:: GPL3718

ID:: 100003718

Select item 3005236924.

Matched_Blood_19nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_19

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523692

ID:: 300523692

Select item 3005236905.

Matched_Blood_18nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_18

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523690

ID:: 300523690

Select item 3005236886.

Matched_Blood_17nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_17

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523688

ID:: 300523688

Select item 3005236867.

Matched_Blood_16nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_16

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523686

ID:: 300523686

Select item 3005236848.

Matched_Blood_15nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_15

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523684

ID:: 300523684

Select item 3005236829.

Matched_Blood_14nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_14

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523682

ID:: 300523682

Select item 30052368010.

Matched_Blood_13nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_13

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523680

ID:: 300523680

Select item 30052367811.

Matched_Blood_12nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_12

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523678

ID:: 300523678

Select item 30052367612.

Matched_Blood_11nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_11

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523676

ID:: 300523676

Select item 30052367413.

Matched_Blood_10nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_10

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523674

ID:: 300523674

Select item 30052367214.

Matched_Blood_9nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_9

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523672

ID:: 300523672

Select item 30052367015.

Matched_Blood_8nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_8

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523670

ID:: 300523670

Select item 30052366816.

Matched_Blood_7nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_7

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523668

ID:: 300523668

Select item 30052366617.

Matched_Blood_6nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_6

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523666

ID:: 300523666

Select item 30052366418.

Matched_Blood_5nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_5

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523664

ID:: 300523664

Select item 30052366219.

Matched_Blood_4nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_4

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523662

ID:: 300523662

Select item 30052366020.

Matched_Blood_3nsp

Organism:: Homo sapiens

Source name:: peripheral whole blood matched_blood_3

Platform:: GPL3718
Series:: GSE20939

Download data: CEL, CHP

Sample

Accession:: GSM523660

ID:: 300523660

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