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Lignocellulosic biomass deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus

The ideal microorganism for consolidated biomass processing to biofuels has the ability to breakdown of lignocellulose. This issue was examined for the H2-producing, extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus growing on...

Species: Caldicellulosiruptor saccharolyticusType: Expression profiling by array

Dataset: GSE18856

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Items: 6

1.

Lignocellulosic biomass deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus

(Submitter supplied) The ideal microorganism for consolidated biomass processing to biofuels has the ability to breakdown of lignocellulose. This issue was examined for the H2-producing, extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus growing on lignocellulose samples as well as model hemicellulose components. Identification of the enzymes utilized by the cell in lignocellulose saccharification was done using whole-genome transcriptional response analysis and comparative genomics.
Organism:
Caldicellulosiruptor saccharolyticus
Type:
Expression profiling by array
Platform:
GPL6681
4 Samples
Download data: TXT
Series
Accession:
GSE18856
ID:
200018856
2.

NCSU_Caldicellulosiruptor saccharolyticus_3K array_version 1

(Submitter supplied) A DNA microarray was designed and constructed based on 2793 protein-coding sequences in the C. saccharolyticus genome obtained from the Department on Energy's Joint Genomes Institute (http://genome.ornl.gov/microbial/csac). OligoArray 2.0 (Rouillard, 2003) was used to generate one 60-mer oligonucleotide probe sequence for each open reading frame. The probes were synthesized (Integrated DNA Technologies, IA), re-suspended in 50% DMSO, and printed onto Ultragap microarray slides (Corning, NY) using a QArrayMini arrayer (Genetix, UK). more...
Organism:
Caldicellulosiruptor saccharolyticus
9 Series
42 Samples
Download data
Platform
Accession:
GPL6681
ID:
100006681
3.

Csac grown on xylose vs glucose for biomass loop

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xylose (channel 1) Csac_glucose (channel 2)
Platform:
GPL6681
Series:
GSE18856
Download data: TXT
Sample
Accession:
GSM455791
ID:
300455791
4.

Csac grown on glucose vs switchgrass for biomass loop

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_glucose (channel 1) Csac_switchgrass (channel 2)
Platform:
GPL6681
Series:
GSE18856
Download data: TXT
Sample
Accession:
GSM455790
ID:
300455790
5.

Csac grown on switchgrass vs poplar for biomass loop

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_switchgrass (channel 1) Csac_poplar (channel 2)
Platform:
GPL6681
Series:
GSE18856
Download data: TXT
Sample
Accession:
GSM455789
ID:
300455789
6.

Csac grown on poplar vs xylose for biomass loop

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_poplar (channel 1) Csac_xylose (channel 2)
Platform:
GPL6681
Series:
GSE18856
Download data: TXT
Sample
Accession:
GSM455788
ID:
300455788
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Supplemental Content

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