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Oligotrophic growth of the extremely thermophilic bacterium C. saccharolyticus on simple and complex sugars

This SuperSeries is composed of the SubSeries listed below.

Species: Caldicellulosiruptor saccharolyticusType: Expression profiling by array

Dataset: GSE17436

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Items: 17

1.

Oligotrophic growth of the extremely thermophilic bacterium C. saccharolyticus on simple and complex sugars

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Caldicellulosiruptor saccharolyticus
Type:
Expression profiling by array
Platform:
GPL6681
15 Samples
Download data: TXT
Series
Accession:
GSE17436
ID:
200017436
2.

NCSU_Caldicellulosiruptor saccharolyticus_3K array_version 1

(Submitter supplied) A DNA microarray was designed and constructed based on 2793 protein-coding sequences in the C. saccharolyticus genome obtained from the Department on Energy's Joint Genomes Institute (http://genome.ornl.gov/microbial/csac). OligoArray 2.0 (Rouillard, 2003) was used to generate one 60-mer oligonucleotide probe sequence for each open reading frame. The probes were synthesized (Integrated DNA Technologies, IA), re-suspended in 50% DMSO, and printed onto Ultragap microarray slides (Corning, NY) using a QArrayMini arrayer (Genetix, UK). more...
Organism:
Caldicellulosiruptor saccharolyticus
9 Series
42 Samples
Download data
Platform
Accession:
GPL6681
ID:
100006681
3.

Csac grown on xylan vs xyloglucan

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xylan (channel 1) Csac_xyloglucan (channel 2)
Platform:
GPL6681
Series:
GSE17427 GSE17436
Download data: TXT
Sample
Accession:
GSM434407
ID:
300434407
4.

Csac grown on glucose vs xylan

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_glucose (channel 1) Csac_xylan (channel 2)
Platform:
GPL6681
Series:
GSE17427 GSE17436
Download data: TXT
Sample
Accession:
GSM434406
ID:
300434406
5.

Csac grown on xylose vs glucose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xylose (channel 1) Csac_glucose (channel 2)
Platform:
GPL6681
Series:
GSE17427 GSE17436
Download data: TXT
Sample
Accession:
GSM434405
ID:
300434405
6.

Csac grown on xyloglucan oligosaccharides vs xylose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xyloglucanoligosaccahrides (channel 1) Csac_xylose (channel 2)
Platform:
GPL6681
Series:
GSE17427 GSE17436
Download data: TXT
Sample
Accession:
GSM434404
ID:
300434404
7.

Csac grown on xyloglucan vs xyloglucan oligosaccharides

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xyloglucan (channel 1) Csac_xyloglucanoligosaccahrides (channel 2)
Platform:
GPL6681
Series:
GSE17427 GSE17436
Download data: TXT
Sample
Accession:
GSM434403
ID:
300434403
8.

Csac grown on sugar mixture vs glucose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_sugarmixture (channel 1) Csac_glucose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434387
ID:
300434387
9.

Csac grown on xylose vs sugar mixture

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xylose (channel 1) Csac_sugarmixture (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434379
ID:
300434379
10.

Csac grown on sugar mixture vs xylose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_sugarmixture (channel 1) Csac_xylose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434354
ID:
300434354
11.

Csac grown on glucose vs sugar mixture

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_glucose (channel 1) Csac_sugarmixture (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434351
ID:
300434351
12.

Csac grown on mannose vs glucose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_mannose (channel 1) Csac_glucose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434349
ID:
300434349
13.

Csac grown on fructose vs mannose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_fructose (channel 1) Csac_mannose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434348
ID:
300434348
14.

Csac grown on xylose vs fructose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_xylose (channel 1) Csac_fructose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434347
ID:
300434347
15.

Csac grown on arabinose vs xylose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_arabinose (channel 1) Csac_xylose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434344
ID:
300434344
16.

Csac grown on galactose vs arabinose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_galacose (channel 1) Csac_arabinose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434343
ID:
300434343
17.

Csac grown on glucose vs galactose

Organism:
Caldicellulosiruptor saccharolyticus
Source name:
Csac_glucose (channel 1) Csac_galactose (channel 2)
Platform:
GPL6681
Series:
GSE17425 GSE17436
Download data: TXT
Sample
Accession:
GSM434336
ID:
300434336
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Supplemental Content

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