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Items: 13

1.

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS

(Submitter supplied) sBLISS (in-suspension Break Labeling In Situ and Sequencing) is a versatile and widely applicable method for identification of endogenous and induced DNA double-strand breaks (DSBs), in any cell type that can be brought into suspension. After in situ labeling, DSB ends are linearly amplified followed by next-generation sequencing and DSB landscape analysis. Here, we present a step-by-step experimental protocol for sBLISS, followed by a basic computational analysis. more...
Organism:
Mus musculus; Homo sapiens
Type:
Other
Platforms:
GPL19057 GPL18573
10 Samples
Download data: BED
Series
Accession:
GSE145598
ID:
200145598

PubMed Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Mus musculus)

Organism:
Mus musculus
10832 Series
306838 Samples
Download data
Platform
Accession:
GPL19057
ID:
100019057

3.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
13277 Series
355984 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

4.

Enterocyte_High_M2

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322066
ID:
304322066

SRA Run Selector

5.

Enterocyte_Mid_M2

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322065
ID:
304322065

SRA Run Selector

6.

Enterocyte_Neg_M2

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322064
ID:
304322064

SRA Run Selector

7.

Enterocyte_High_M1

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322063
ID:
304322063

SRA Run Selector

8.

Enterocyte_Mid_M1

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322062
ID:
304322062

SRA Run Selector

9.

Enterocyte_Neg_M1

Organism:
Mus musculus
Source name:
enterocytes isolated from jejunum
Platform:
GPL19057
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322061
ID:
304322061

SRA Run Selector

10.

TK6_ETO_Rep2

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL18573
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322060
ID:
304322060

SRA Run Selector

11.

TK6_DMSO_Rep2

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL18573
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322059
ID:
304322059

SRA Run Selector

12.

TK6_ETO_Rep1

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL18573
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322058
ID:
304322058

SRA Run Selector

13.

TK6_DMSO_Rep1

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL18573
Series:
GSE145598
Download data: BED
Sample
Accession:
GSM4322057
ID:
304322057

SRA Run Selector

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