GSE136415[Accession] - GEO DataSets - NCBI

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Items: 15

Select item 2001364151.

A comparison of evolutionary changes and constraints on gene regulation between fin and limb development [ATAC-seq]

(Submitter supplied) We report time-series transcriptome of developing bamboo shark fin buds and mouse forelimb buds, and open chromatin regions of developing mouse forelimb buds. The major contributions of this study are 1) transcriptomic data with an accurate orthology map for a systematic comparison between the two species; 2) high quality chromatin accessibility data for mouse limb development; 3) discovery of mass heterochronic genes between fins and limbs; 4) hourglass-shaped conservation between fins and limbs, providing insights into a general trend of gene regulatory evolution.

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL21273
13 Samples

Download data: BW

Series

Accession:: GSE136415

ID:: 200136415

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000212732.

HiSeq X Ten (Mus musculus)

Organism:: Mus musculus

1948 Series
43000 Samples

Platform

Accession:: GPL21273

ID:: 100021273

Select item 3040487003.

Organism:: Mus musculus

Source name:: mouse genome

Platform:: GPL21273
Series:: GSE136415 GSE136445

Sample

Accession:: GSM4048700

ID:: 304048700

SRA Run Selector

Select item 3040486994.

ATAC-seq E12.5 replicate 3

Organism:: Mus musculus

Source name:: forelimb bud at E12.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048699

ID:: 304048699

SRA Run Selector

Select item 3040486985.

ATAC-seq E12.5 replicate 2

Organism:: Mus musculus

Source name:: forelimb bud at E12.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048698

ID:: 304048698

SRA Run Selector

Select item 3040486976.

ATAC-seq E12.5 replicate 1

Organism:: Mus musculus

Source name:: forelimb bud at E12.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048697

ID:: 304048697

SRA Run Selector

Select item 3040486967.

ATAC-seq E11.5 replicate 3

Organism:: Mus musculus

Source name:: forelimb bud at E11.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048696

ID:: 304048696

SRA Run Selector

Select item 3040486958.

ATAC-seq E11.5 replicate 2

Organism:: Mus musculus

Source name:: forelimb bud at E11.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048695

ID:: 304048695

SRA Run Selector

Select item 3040486949.

ATAC-seq E11.5 replicate 1

Organism:: Mus musculus

Source name:: forelimb bud at E11.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048694

ID:: 304048694

SRA Run Selector

Select item 30404869310.

ATAC-seq E10.5 replicate 3

Organism:: Mus musculus

Source name:: forelimb bud at E10.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048693

ID:: 304048693

SRA Run Selector

Select item 30404869211.

ATAC-seq E10.5 replicate 2

Organism:: Mus musculus

Source name:: forelimb bud at E10.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048692

ID:: 304048692

SRA Run Selector

Select item 30404869112.

ATAC-seq E10.5 replicate 1

Organism:: Mus musculus

Source name:: forelimb bud at E10.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048691

ID:: 304048691

SRA Run Selector

Select item 30404869013.

ATAC-seq E09.5 replicate 3

Organism:: Mus musculus

Source name:: forelimb bud at E09.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048690

ID:: 304048690

SRA Run Selector

Select item 30404868914.

ATAC-seq E09.5 replicate 2

Organism:: Mus musculus

Source name:: forelimb bud at E09.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048689

ID:: 304048689

SRA Run Selector

Select item 30404868815.

ATAC-seq E09.5 replicate 1

Organism:: Mus musculus

Source name:: forelimb bud at E09.5

Platform:: GPL21273
Series:: GSE136415 GSE136445

Download data: BW

Sample

Accession:: GSM4048688

ID:: 304048688

SRA Run Selector

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