GSE115314[Accession] - GEO DataSets - NCBI

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Select item 2001153141.

The lineage-specific transcriptional regulator, CDX2, navigates a dynamic chromatin landscape to control distinct stages of intestinal development

(Submitter supplied) Important lineage regulators, such as the intestinal lineage regulator CDX2, can function over the timespan of intestinal development. The consequences of CDX2 knockout in the embryo versus in the adult are quite distinct. The data below provide a rationale for these divergent transcription factor functions in distinct developmental contexts, with unique binding patterns of CDX2 observed via ChIP-seq and unique gene regulatory targets defined via RNA-seq. more...

Organism:: Mus musculus; Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL21626 GPL21697
21 Samples

Download data: BW, TXT

Series

Accession:: GSE115314

ID:: 200115314

SRA Run Selector

Select item 1000216972.

NextSeq 550 (Homo sapiens)

Organism:: Homo sapiens

1257 Series
33936 Samples

Platform

Accession:: GPL21697

ID:: 100021697

Select item 1000216263.

NextSeq 550 (Mus musculus)

Organism:: Mus musculus

1253 Series
54737 Samples

Platform

Accession:: GPL21626

ID:: 100021626

Select item 3031754974.

ChIP-seq control library mouse

Organism:: Mus musculus

Source name:: Mouse midgut epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175497

ID:: 303175497

SRA Run Selector

Select item 3031754965.

ATAC-seq mouse E16.5 Cdx2-KO rep2

Organism:: Mus musculus

Source name:: Mouse midgut epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175496

ID:: 303175496

SRA Run Selector

Select item 3031754956.

ATAC-seq mouse E16.5 Cdx2-KO rep1

Organism:: Mus musculus

Source name:: Mouse midgut epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175495

ID:: 303175495

SRA Run Selector

Select item 3031754947.

ATAC-seq mouse E16.5 wt rep2

Organism:: Mus musculus

Source name:: Mouse midgut epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175494

ID:: 303175494

SRA Run Selector

Select item 3031754938.

ATAC-seq mouse E16.5 wt rep1

Organism:: Mus musculus

Source name:: Mouse midgut epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175493

ID:: 303175493

SRA Run Selector

Select item 3031754929.

RNA-seq E12.5 intestinal epithelium Cdx2-KO rep2

Organism:: Mus musculus

Source name:: Mouse intestinal epithelial cells

Platform:: GPL21626
Series:: GSE115314

Sample

Accession:: GSM3175492

ID:: 303175492

SRA Run Selector

Select item 30317549110.

RNA-seq E12.5 intestinal epithelium Cdx2-KO rep1

Organism:: Mus musculus

Source name:: Mouse intestinal epithelial cells

Platform:: GPL21626
Series:: GSE115314

Sample

Accession:: GSM3175491

ID:: 303175491

SRA Run Selector

Select item 30317549011.

RNA-seq E12.5 intestinal epithelium wt rep2

Organism:: Mus musculus

Source name:: Mouse intestinal epithelial cells

Platform:: GPL21626
Series:: GSE115314

Sample

Accession:: GSM3175490

ID:: 303175490

SRA Run Selector

Select item 30317548912.

RNA-seq E12.5 intestinal epithelium wt rep1

Organism:: Mus musculus

Source name:: Mouse intestinal epithelial cells

Platform:: GPL21626
Series:: GSE115314

Sample

Accession:: GSM3175489

ID:: 303175489

SRA Run Selector

Select item 30317548813.

Cdx2 ChIP-seq mouse Adult rep1

Organism:: Mus musculus

Source name:: Mouse intestinal villus epithelial cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175488

ID:: 303175488

SRA Run Selector

Select item 30317548714.

Cdx2 ChIP-seq mouse E17.5 rep1

Organism:: Mus musculus

Source name:: Mouse midgut cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175487

ID:: 303175487

SRA Run Selector

Select item 30317548615.

Cdx2 ChIP-seq mouse E16.5 rep1

Organism:: Mus musculus

Source name:: Mouse midgut cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175486

ID:: 303175486

SRA Run Selector

Select item 30317548516.

Cdx2 ChIP-seq mouse E13.5 rep2

Organism:: Mus musculus

Source name:: Mouse midgut cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175485

ID:: 303175485

SRA Run Selector

Select item 30317548417.

Cdx2 ChIP-seq mouse E13.5 rep1

Organism:: Mus musculus

Source name:: Mouse midgut cells

Platform:: GPL21626
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175484

ID:: 303175484

SRA Run Selector

Select item 30317550418.

ChIP-seq control library human

Organism:: Homo sapiens

Source name:: human Wnt+Fgf-specified intestinal culture cells

Platform:: GPL21697
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175504

ID:: 303175504

SRA Run Selector

Select item 30317550319.

Adult Duodenal cells human patient 2

Organism:: Homo sapiens

Source name:: human Adult Duodenal cells

Platform:: GPL21697
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175503

ID:: 303175503

SRA Run Selector

Select item 30317550220.

Adult Duodenal cells human patient 1

Organism:: Homo sapiens

Source name:: human Adult Duodenal cells

Platform:: GPL21697
Series:: GSE115314

Download data: BW

Sample

Accession:: GSM3175502

ID:: 303175502

SRA Run Selector

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