Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 91

1.

RNA-seq of S. meliloti strain ectopically overexpressing trpL and RIP-seq with 3xFLAG-tagged peptide peTrpL from S. meliloti

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Sinorhizobium meliloti
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25460
15 Samples
Download data: WIG
Series
Accession:
GSE118689
ID:
200118689
2.

Analysis of RNA coimmunoprecipitated with 3xFLAG-tagged peptide peTrpL from Sinorhizobium meliloti

(Submitter supplied) We show that specific RNAs are coimmunoprecipitated in a tetracycline-dependent manner with the Flag-tagged peptide peTrpL of S. meliloti
Organism:
Sinorhizobium meliloti
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25460
6 Samples
Download data: WIG
Series
Accession:
GSE118688
ID:
200118688
3.

Transcriptome analysis of Sinorhizobium meliloti strain ectopically overexpressing trpL

(Submitter supplied) We show that the RNA leves of many genes in the S. meliloti overexpressing strain (OE) 2011 (pRK-RcsR1) are more similar to the levels of in wild type (WT) strain 2011 than in the empty vector control (EVC) strain 2011(pRK4352). Since the plasmid-containing strains were grown in the presence of 10 µg/ml tetracycline (Tc), while the WT was grown without Tc, the results suggest that the intrecellular Tc concentration in the OE strain are lower than in the EVC. more...
Organism:
Sinorhizobium meliloti
Type:
Expression profiling by high throughput sequencing
Platform:
GPL25460
9 Samples
Download data: WIG
Series
Accession:
GSE118687
ID:
200118687
4.

Global identification of RNase E sites in Vibrio cholerae

(Submitter supplied) In this study, we employed TIER-seq in V. cholerae to identify cleavage sites of RNase E on a genome-wide scale.
Organism:
Vibrio cholerae
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL25005
12 Samples
Download data: CSV, WIG
Series
Accession:
GSE148675
ID:
200148675
5.

Exonuclease-mediated sRNA activation in competence regulation in a Gram-positive bacterium

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Streptococcus pneumoniae
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL23797
28 Samples
Download data: WIG
Series
Accession:
GSE145605
ID:
200145605
6.

Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control

(Submitter supplied) RNA-protein interactions crucially underlie many steps of bacterial gene expression including post-transcriptional control by small regulatory RNAs (sRNAs). In stark contrast with recent progress in Gram-negative bacteria, knowledge about RNA and protein complexes in Gram-positive species remains scarce. Here, we used Grad-seq to draft a landscape of such complexes in Streptococcus pneumoniae, determining the sedimentation profiles of ~88% of the transcripts and ~62% of the proteins of this important human pathogen. more...
Organism:
Streptococcus pneumoniae
Type:
Other
Platform:
GPL23797
6 Samples
Download data: WIG
Series
Accession:
GSE145604
ID:
200145604
7.

Different Campylobacter species show variances in their heat stress response

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Campylobacter coli; Campylobacter lari
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL19975 GPL19973
8 Samples
Download data: WIG
Series
Accession:
GSE67486
ID:
200067486
8.

Different Campylobacter species show variances in their heat stress response [Campylobacter lari]

(Submitter supplied) Background: The food-borne pathogen Campylobacter is one of the most important zoonotic pathogens. Compared to other zoonotic bacteria, Campylobacter species are quite susceptible to environmental or technological stressors. This might be due to the lack of many stress response mechanisms described in other bacteria. Nevertheless, Campylobacter is able to survive in the environment and food products. more...
Organism:
Campylobacter lari
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19975
4 Samples
Download data: WIG
Series
Accession:
GSE67468
ID:
200067468
9.

Different Campylobacter species show variances in their heat stress response [Campylobacter coli]

(Submitter supplied) Background: The food-borne pathogen Campylobacter is one of the most important zoonotic pathogens. Compared to other zoonotic bacteria, Campylobacter species are quite susceptible to environmental or technological stressors. This might be due to the lack of many stress response mechanisms described in other bacteria. Nevertheless, Campylobacter is able to survive in the environment and food products. more...
Organism:
Campylobacter coli
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19973
4 Samples
Download data: WIG
Series
Accession:
GSE67466
ID:
200067466
10.

YBEY is an essential biogenesis factor for mitochondrial ribosomes

(Submitter supplied) Ribosome biogenesis relies on a number of specific factors. Some of them are remarkably conserved, suggesting that they play essential roles even in distant evolutionary contexts. This is namely the case for the UPF0054 protein YBEY found in all bacteria, but also in many Eukarya. Proposed to act as an endoribonuclease processing the 3’ end of 16S rRNA, YBEY is critically required for translation in model bacteria and plant chloroplasts. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16791
6 Samples
Download data: TXT
Series
Accession:
GSE134960
ID:
200134960
11.

Transcriptomic profiling of HeLa cells treated with miR-let-7i-3p and control-miR

(Submitter supplied) To have a global picture of the targets of the mir-let-7i-3p, we assessed transcriptome changes, by deep-sequencing, of HeLa cells transfected with this miRNA or a control miRNA (cel-miR-231).
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL11154
2 Samples
Download data: CSV
Series
Accession:
GSE69660
ID:
200069660
12.

sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1

(Submitter supplied) Trans-encoded sRNA154 is exclusively expressed under nitrogen (N)-deficiency in Methanosarcina mazei strain Gö1. The respective deletion strain showed a significant growth defect under N-limitation, pointing towards a regulatory role of sRNA154 in the N-metabolism. Aiming to elucidate this regulatory function we characterized sRNA154 by biochemical and genetic approaches. 24 homologs of sRNA154 were identified in recently reported draft genomes of Methanosarcina strains, demonstrating high conservation in sequence and predicted secondary structure with two highly conserved single stranded loop regions. more...
Organism:
Methanosarcina mazei Go1
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22308
4 Samples
Download data: WIG
Series
Accession:
GSE85456
ID:
200085456
13.

Effects of gene-by-environment interaction on the transcriptome and methylome of mice deficient for tryptophan hydroxylase 2

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL21103 GPL17021
96 Samples
Download data
Series
Accession:
GSE110330
ID:
200110330
14.

Effects of gene-by-environment interaction on the methylome of mice deficient for tryptophan hydroxylase 2 [MBD-seq]

(Submitter supplied) Purpose: Investigation of effects of early adversity in mice deficient for brain serotonin on the methylome Methods: Following materal separation in early childhood and behavioural screening in adulthood, 4 moth old males, either wildtype or carrying a hetero- or homozygous knockout of the thryptophan hyroxylase 2 gene, were sacrificed, brains extracted, the amygdalae of both hemispheres dissected, blended and separated in two protions. more...
Organism:
Mus musculus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL21103
48 Samples
Download data: TXT
Series
Accession:
GSE110329
ID:
200110329
15.

Effects of gene-by-environment interaction on the transcriptome of mice deficient for tryptophan hydroxylase 2 [RNA-seq]

(Submitter supplied) Purpose: Investigation of effects of early adversity in mice deficient for brain serotonin on the transcriptome Methods: Following materal separation in early childhood and behavioural screening in adulthood, 4 moth old males, either wildtype or carrying a hetero- or homozygous knockout of the thryptophan hyroxylase 2 gene, were sacrificed, brains extracted, the amygdalae of both hemispheres dissected, blended and separated in two protions. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17021
48 Samples
Download data: TXT
Series
Accession:
GSE110328
ID:
200110328
16.

Host transcriptome sequencing of FACS-sorted human induced pluripotent stem cell-derived brain endothelial cells infected with Neisseria meningitidis

(Submitter supplied) This study investigates host transcriptome changes of infected human iPS-derived brain endothelial cells in response to prolonged Nm infection (24h)
Organism:
Neisseria meningitidis MC58; Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL26178 GPL18573
2 Samples
Download data: WIG
Series
Accession:
GSE126449
ID:
200126449
17.

Differential RNA-Seq (dRNA-seq) of Staphylococcus epidermidis PS2 and PS10 isolates

(Submitter supplied) We performed differential RNA-seq of two Staphylococcus epidermidis clinical isolates (PS2 and PS10) to compare their transcription profiles. The isolates were originally obtained from blood cultures during a systemic infection in an immunocompromised patient (Weisser et al. 2010. J Clin Microbiol 48: 2407-2412). They are of clonal origin, but differ phenotypically with respect to extracellular biofilm matrix production. more...
Organism:
Staphylococcus epidermidis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26150
4 Samples
Download data: WIG
Series
Accession:
GSE126097
ID:
200126097
18.

A conserved seed-pairing domain affords small RNA-mediated stress resistance in enterobacteria

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Vibrio cholerae C6706
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL26051 GPL26050
16 Samples
Download data
Series
Accession:
GSE125224
ID:
200125224
19.

Identification of variant distribution in ethanol-selected sRNA libraries

(Submitter supplied) In this study we subjected a library of synthetic sRNAs to multiple rounds of ethanol selection and analyzed changes in sRNA variant abundance by high-throughput sequencing.
Organism:
Vibrio cholerae C6706
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL26051
7 Samples
Download data: CSV
Series
Accession:
GSE125161
ID:
200125161
20.

MicV, VrrA sRNA target identification

(Submitter supplied) In this study we determined the target spectra of the MicV and VrrA sRNAs via pulse-expression followed by RNA-sequencing.
Organism:
Vibrio cholerae C6706
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26050
9 Samples
Download data: XLSX
Series
Accession:
GSE125160
ID:
200125160
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=F%C3%B6rstner%20KU[Author]|query=1|qty=49|blobid=NCID_1_3591843_130.14.18.48_9001_1590756696_815830178_0MetA0_S_MegaStore_F_1|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center