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Items: 12

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1.

Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by array
Platforms:
GPL14887 GPL19756
70 Samples
Download data: PAIR
Series
Accession:
GSE71052
ID:
200071052
2.

Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase (BrdU)

(Submitter supplied) The S. cerevisiae Forkhead Box (FOX) proteins, Fkh1 and Fkh2, regulate diverse cellular processes including transcription, long-range DNA interactions during homologous recombination, and replication origin timing and long-range origin clustering. As stimulators of early origin activation, we hypothesized that Fkh1 and Fkh2 abundance limits the rate of origin activation genome-wide. Existing methods, however, were not well suited to quantitative, genome-wide measurements of origin firing between strains and conditions. more...
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL19756
64 Samples
Download data: TXT
3.

Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae [Array Data]

(Submitter supplied) The replication of eukaryotic chromosomes is organized temporally and spatially within the nucleus through epigenetic regulation of replication origin function. The characteristic initiation timing of specific origins is thought to reflect their chromatin environment or sub-nuclear positioning, however the mechanism remains obscure. Here we show that the yeast Forkhead transcription factors, Fkh1 and Fkh2, are global determinants of replication origin timing. more...
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by genome tiling array; Other
Platform:
GPL14887
30 Samples
Download data: PAIR
Series
Accession:
GSE33702
ID:
200033702
4.

Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL9377 GPL14887
56 Samples
Download data: PAIR
Series
Accession:
GSE33704
ID:
200033704
5.

DM replicate 2 Input (Total)

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826212
ID:
301826212
6.

DM replicate 1Input (Total)

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826211
ID:
301826211
7.

DM Fkh1 OE replicate 2 Input (Total)

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826210
ID:
301826210
8.

DM Fkh1 OE replicate 1 Input (Total)

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826209
ID:
301826209
9.

DM replicate 2 IP

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826208
ID:
301826208
10.

DM replicate 1 IP

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826207
ID:
301826207
11.

DM Fkh1 OE replicate 2 IP

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826206
ID:
301826206
12.

DM Fkh1 OE replicate 1 IP

Organism:
Saccharomyces cerevisiae
Source name:
S. cerevisiae
Platform:
GPL19756
Series:
GSE71050 GSE71052
Download data
Sample
Accession:
GSM1826205
ID:
301826205
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