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1.
Full record GDS5027

NeOAdjuvant Herceptin (NOAH) trial: formalin-fixed, paraffin-embedded breast cancer biopsies

Analysis of FFPE core biopsies from pre-treated patients with HER2+ breast cancer (BC) randomized to receive neoadjuvant chemotherapy only or chemotherapy+trastuzumab (herceptin). Results provide insight into the molecular basis of survival outcomes following trastuzumab-based chemotherapy.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 2 genotype/variation, 2 other, 2 protocol sets
Platform:
GPL570
Series:
GSE50948
156 Samples
Download data: CEL
DataSet
Accession:
GDS5027
ID:
5027
2.
Full record GDS4930

Fetal lung development

Analysis of lung tissues at 53 to 154 days post conception. Results provide insight into the molecular regulation of lung development.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 29 time sets
Platform:
GPL570
Series:
GSE14334
38 Samples
Download data: CEL
3.
Full record GDS4786

HIV and tuberculosis co-infection: peripheral blood mononuclear cell

Analysis of PBMCs from HIV patients with and without M. tuberculosis (TB) co-infection. Co-infection with TB is a cause of death in HIV-infected individuals. Results provide insight into a molecular signature to distinguish HIV/TB co-infected patients from HIV mono-infected patients.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 infection sets
Platform:
GPL10558
Series:
GSE50834
44 Samples
Download data
4.
Full record GDS4589

Stage I endometrial cancer: microdissected frozen uterine tumors

Analysis of stage I endometrial cancers (representing endometrioid and papillary serous histologic subtypes) with a heterogeneous distribution of grade and stage/depth of myometrial invasion. Results provide insight into molecular mechanisms underlying early endometrial cancer histological types.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 disease state, 11 other, 3 tissue sets
Platform:
GPL570
Series:
GSE17025
103 Samples
Download data: CEL
5.
Full record GDS4587

UCSF sarcoidosis and hypersensitivity pneumonitis cohort: peripheral blood mononuclear cells

Analysis of whole blood from sarcoidosis and hypersensitivity pneumonitis patients. Results provide insight into molecular mechanisms underlying sarcoidosis and hypersensitivity pneumonitis in peripheral blood.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 5 disease state sets
Platform:
GPL570
Series:
GSE19314
66 Samples
Download data: CEL
6.
Full record GDS4471

Medulloblastomas in children

Analysis of medulloblastomas from children ages 3 to 16 years. Medulloblastoma is a malignant childhood brain tumor comprising four discrete subgroups. Results provide insights into pathogenesis of medulloblastoma and highlight targets for therapeutic development.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 6 disease state, 2 gender, 4 other sets
Platform:
GPL570
Series:
GSE37418
76 Samples
Download data: CEL
7.
Full record GDS4358

Two types of HIV-associated neurocognitive impairment: brain regions

Analysis of basal ganglia, frontal cortex, and white matter from HIV patients with HIV-associated dementia (HAD) or HAD plus HIV encephalitis (HIVE). Results provide insight into molecular events of neurological impairment and inflammation associated with HIV infection in different brain regions.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 4 disease state, 3 tissue sets
Platform:
GPL570
Series:
GSE35864
72 Samples
Download data: CEL
8.
Full record GDS4327

Human hepatocytes from xenogeneic host livers

Analysis of hepatocytes isolated from chimeric mouse livers repopulated with human hepatocytes (c-heps) or from normal human livers (h-heps). Results provide insight into the potential use of chimeric mice as a relevant model for human liver biomedical experiments.
Organism:
Homo sapiens; Mus musculus
Type:
Expression profiling by array, transformed count, 2 species, 23 tissue sets
Platform:
GPL570
Series:
GSE33846
32 Samples
Download data: CEL
DataSet
Accession:
GDS4327
ID:
4327
9.
Full record GDS4267

Systemic juvenile idiopathic arthritis and non-systemic JIA subtypes: peripheral blood mononuclear cells

Analysis of PBMCs from patients with systemic juvenile idiopathic arthritis (sJIA) or non-sJIA. sJIA patients have significantly increased expansion of immature PBMC subpopulations, including CD34+ cells. Results provide insight into molecular mechanisms underlying sJIA pathogenesis.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 3 disease state, 8 other sets
Platform:
GPL570
Series:
GSE21521
154 Samples
Download data: CEL
10.
Full record GDS4261

Diel and circadian effects on adult female heads and bodies: time course

Analysis of heads and bodies of mated, non-blood-fed, adult females maintained under a 12hr:12hr light:dark (LD) cycle or constant dark (DD) conditions; samples were collected every 4hr for 48 hr. Results provide insight into molecular mechanisms under circadian and LD cycle control.
Organism:
Plasmodium falciparum; Anopheles gambiae
Type:
Expression profiling by array, transformed count, 2 growth protocol, 26 time, 2 tissue sets
Platform:
GPL1321
Series:
GSE22585
104 Samples
Download data: CEL
11.
Full record GDS4130

Endoplasmic reticulum stress effect on lymphoblastoid cells of monozygotic twins

Analysis of immortalized B cells from MZ twin pairs (14 of European ancestry, 12 African American) treated in vitro with thapsigargin to induce ER stress. ER stress induces the unfolded protein response (UPR). Results provide insight into the molecular basis of the UPR response within twin pairs.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 2 agent, 2 genotype/variation, 2 individual, 26 other sets
Platform:
GPL570
Series:
GSE19519
104 Samples
Download data: CEL
12.
Full record GDS3985

TGF-beta/Smad3 signaling blockade effect on white adipose tissue

Analysis of WAT from high fat diet-fed Smad3-/- mice and anti-TGF-beta antibody-treated, diet-induced obese (DIO) mice. Smad3 loss protects against DIO and diabetes. TGF-b signaling blockade protects against obesity and diabetes. Results provide insight into molecular mechanisms underlying diabetes.
Organism:
Mus musculus
Type:
Expression profiling by array, transformed count, 3 genotype/variation, 4 protocol sets
Platform:
GPL1261
Series:
GSE28598
12 Samples
Download data: CEL, CHP
13.
Full record GDS3901

Burkitt lymphoma subtypes: lymph-node biopsies

Analysis of lymph-node biopsies representing the 3 clinical subsets of Burkitt lymphoma (BL): endemic, sporadic, and immunodeficiency-associated. Each BL subtype affects different populations and can present with different features. Results provide insight into the molecular basis of BL subtypes.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 2 development stage, 3 disease state, 2 individual sets
Platform:
GPL570
Series:
GSE26673
16 Samples
Download data: CEL
DataSet
Accession:
GDS3901
ID:
3901
14.
Full record GDS3898

Social isolation effect on peripheral blood mononuclear cells

Analysis of PBMCs from chronically lonely, older adults. Lack of close social ties is a well-established risk factor for diseases involving the immune system and inflammation. Results provide insight into the molecular mechanisms underlying those effects.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 individual sets
Platform:
GPL6883
Series:
GSE25837
93 Samples
Download data
15.
Full record GDS3875

Diabetic children: peripheral blood mononuclear cells (U133B)

Analysis of PBMCs from children (2-18 years) with newly diagnosed type 1 or 2 diabetes (T1D or T2D). One and 4 month samples were obtained from 20 of the T1D patients. Results provide insight into molecular mechanisms that distinguish T1D and T2D and those that are common to both forms of diabetes.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 3 disease state, 2 gender, 4 time sets
Platform:
GPL97
Series:
GSE9006
117 Samples
Download data: CEL
DataSet
Accession:
GDS3875
ID:
3875
16.
Full record GDS3874

Diabetic children: peripheral blood mononuclear cells (U133A)

Analysis of PBMCs from children (2-18 years) with newly diagnosed type 1 or 2 diabetes (T1D or T2D). One and 4 month samples were obtained from 20 of the T1D patients. Results provide insight into molecular mechanisms that distinguish T1D and T2D and those that are common to both forms of diabetes.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 3 disease state, 2 gender, 4 time sets
Platform:
GPL96
Series:
GSE9006
117 Samples
Download data: CEL
DataSet
Accession:
GDS3874
ID:
3874
17.
Full record GDS3806

Atopic dermatitis

Analysis of non-lesional epidermal samples from individuals with atopic dermatitis (AD). AD is characterized by dry eczematous skin lesions, a relapsing and often chronic course, and an intense intractable pruritus. Results provide insight into the molecular pathogenesis of AD.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 3 disease state sets
Platform:
GPL2700
Series:
GSE26952
16 Samples
Download data
18.
Full record GDS3638

Actein effect on breast cancer cell line: dose response and time course

Analysis of MDB-MB-453 breast cancer cells treated with 20 or 40 ug/ml actein for 6 or 24 hours. Actein is a triterpene glycoside from the herb black cohosh and inhibits the growth of cancer cells in vitro. Results provide insight into the molecular basis of this inhibitory effect.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 2 agent, 3 dose, 2 time sets
Platform:
GPL571
Series:
GSE7848
16 Samples
Download data: CEL
DataSet
Accession:
GDS3638
ID:
3638
19.
Full record GDS3498

Interleukin-12 effect on peripheral blood mononuclear cells (HG-U133B)

Analysis of cultured peripheral blood mononuclear cells (PBMCs) stimulated with interleukin-12 (IL-12). PBMCs obtained from 7 donors. IL-12 plays a central role in adaptive and innate immunity. Results provide further insight into the effects of IL-12 on the immune response.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 agent, 7 individual sets
Platform:
GPL97
Series:
GSE12839
14 Samples
Download data: CEL
20.
Full record GDS3497

Interleukin-12 effect on peripheral blood mononuclear cells (HG-U133A)

Analysis of cultured peripheral blood mononuclear cells (PBMCs) stimulated with interleukin-12 (IL-12). PBMCs obtained from 7 donors. IL-12 plays a central role in adaptive and innate immunity. Results provide further insight into the effects of IL-12 on the immune response.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 agent, 7 individual sets
Platform:
GPL96
Series:
GSE12839
14 Samples
Download data: CEL
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db=gds|term=%22Liopropoma%20africanum%22%20or%20%22African%20Basslets%22|query=1|qty=189|blobid=NCID_1_377700038_130.14.22.215_9001_1508596332_2081589487_0MetA0_S_MegaStore_F_1|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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