nsv835603

  • Variant Calls:6
  • Validation:Yes
  • Region Size:21,103

Links to Other Resources

Source: NCBI

Genome View

Select assembly:
Overlapping variant regions from other studies: 6 SVs from 3 studies. See in: genome view    
Remapped(Score: Good):107,238,668-107,259,770Question Mark
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view    
Submitted genomic109,994,757-110,015,862Question Mark
Overlapping variant regions from other studies: 6 SVs from 3 studies. See in: genome view    
Remapped(Score: Good):106,848,983-106,870,085Question Mark

Variant Region Placement Information

Variant Region IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrInner StartInner Stop
nsv835603RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4107,238,668107,259,770
nsv835603Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,994,757110,015,862
nsv835603RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4106,848,983106,870,085

Variant Call Information

Variant Call IDTypeSample IDMethodAnalysisOther Calls in this Sample and Study
nssv1456234copy number gainBINESequencingRead depth813
nssv1457117copy number gainBTAN1SequencingRead depth778
nssv1457918copy number gainBTAN2SequencingRead depth783
nssv1458715copy number gainBTAN3SequencingRead depth779
nssv1459517copy number gainBTHOSequencingRead depth717
nssv1460921copy number gainDTTRACESequencingRead depth642

Variant Call Placement Information

Variant Call IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrOuter StartInner StartInner StopOuter Stop
nssv1456234RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4-107,238,668107,261,818107,261,818
nssv1457117RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4-107,238,668107,261,818107,261,818
nssv1457918RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4-107,238,668107,261,818107,261,818
nssv1458715RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4-107,238,668107,261,818107,261,818
nssv1459517RemappedGoodBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4-107,238,668107,261,818107,261,818
nssv1460921RemappedPerfectBtau_5.0.1Primary AssemblyFirst PassNC_007302.6Chr4107,240,665107,241,665107,259,770107,261,818
nssv1456234Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,993,757109,994,757110,015,862110,017,910
nssv1457117Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,993,757109,994,757110,015,862110,017,910
nssv1457918Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,993,757109,994,757110,015,862110,017,910
nssv1458715Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,993,757109,994,757110,015,862110,017,910
nssv1459517Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,993,757109,994,757110,015,862110,017,910
nssv1460921Submitted genomicBtau_4.0 (bosTau4)NC_007302.3Chr4109,996,757109,997,757110,015,862110,017,910
nssv1456234RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4-106,848,983106,872,133106,872,133
nssv1457117RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4-106,848,983106,872,133106,872,133
nssv1457918RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4-106,848,983106,872,133106,872,133
nssv1458715RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4-106,848,983106,872,133106,872,133
nssv1459517RemappedGoodBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4-106,848,983106,872,133106,872,133
nssv1460921RemappedPerfectBos_taurus_UMD_3.1.1Primary AssemblyFirst PassAC_000161.1Chr4106,850,980106,851,980106,870,085106,872,133

Validation Information

Variant Call IDExperiment IDSample IDMethodAnalysisResult
nssv14571174BTAN1FISHProbe signal intensityPass
nssv14579184BTAN2FISHProbe signal intensityPass
nssv14587154BTAN3FISHProbe signal intensityPass
nssv14595174BTHOFISHProbe signal intensityPass
nssv14609214DTTRACEFISHProbe signal intensityPass

No genotype data were submitted for this variant

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