nsv481620
- Organism: Homo sapiens
- Study:nstd35 (Kidd et al. 2010)
- Variant Type:novel sequence insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant is Defined by:GU269126
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:OEA contig. The coordinate provided is from the mappable end of a contig assembled from multiple read pairs, and indicates the genomic vicinity of a novel sequence insertion.
- Publication(s):Kidd et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 152 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 152 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 7 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv481620 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 194,277,002 | 194,277,002 |
| nsv481620 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 193,994,791 | 193,994,791 |
| nsv481620 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 195,477,493 | 195,477,493 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3018330 | novel sequence insertion | Sequencing | One end anchored assembly |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3018330 | Remapped | Perfect | NC_000003.12:g.194 277002_194277003in s? | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 194,277,002 | 194,277,002 |
| nssv3018330 | Remapped | Perfect | NC_000003.11:g.193 994791_193994792in s? | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 193,994,791 | 193,994,791 |
| nssv3018330 | Submitted genomic | NC_000003.9:g.1954 77493_195477494ins ? | NCBI35 (hg17) | NC_000003.9 | Chr3 | 195,477,493 | 195,477,493 |