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dbVar

Database of genomic structural variation

nsv2787518

Organism: Homo sapiens

Study:nstd132 (Walker et al. 2017)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:75,802

Publication(s):Walker et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 565 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):63,217,271-63,293,072

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv2787518	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nsv2787518	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nsv2787518	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000020.9	Chr20	61,319,068	61,394,869

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv13667067	copy number loss	CGPQ-271	SNP array	Genotyping	17
nssv13667068	copy number loss	CGPQ-1784	SNP array	Genotyping	47
nssv13667069	copy number loss	CGPQ-1762	SNP array	Genotyping	17
nssv13667070	copy number loss	CGPQ-203	SNP array	Genotyping	35
nssv13667071	copy number loss	CGPQ-1767	SNP array	Genotyping	43
nssv13667072	copy number loss	CGPQ-1769	SNP array	Genotyping	39

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv13667067	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667068	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667069	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667070	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667071	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667072	Remapped	Perfect	NC_000020.11:g.(?_ 63217271)_(6329307 2_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	63,217,271	63,293,072
nssv13667067	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667068	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667069	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667070	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667071	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667072	Remapped	Perfect	NC_000020.10:g.(?_ 61848623)_(6192442 4_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	61,848,623	61,924,424
nssv13667067	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869
nssv13667068	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869
nssv13667069	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869
nssv13667070	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869
nssv13667071	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869
nssv13667072	Submitted genomic		NC_000020.9:g.(?_6 1319068)_(61394869 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	61,319,068	61,394,869

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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