nsv2291771
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15
- Description:MOTIF=[AAAC],NS=[301],REF=[3.75],RL=[15],RPA=[
3.5,4.0],RU=[AAAC],QUAL=[290822] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 154 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 154 SVs from 23 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv2291771 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 17,800,854 | 17,800,868 |
nsv2291771 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 17,802,477 | 17,802,491 |
Variant Call Information
Variant Call ID | Type | Repeat Motif | Method | Analysis |
---|---|---|---|---|
nssv11640231 | short tandem repeat | (AAAC) 4 | Sequencing | Genotyping |
nssv11739859 | short tandem repeat | (AAAC) 3.5 | Sequencing | Genotyping |
nssv11739860 | short tandem repeat | (AAAC) 3.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|
nssv11640231 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 17,800,854 | 17,800,868 |
nssv11739859 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 17,800,854 | 17,800,868 |
nssv11739860 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 17,800,854 | 17,800,868 |
nssv11640231 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 17,802,477 | 17,802,491 | ||
nssv11739859 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 17,802,477 | 17,802,491 | ||
nssv11739860 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 17,802,477 | 17,802,491 |