Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv2070298

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:16

Description:MOTIF=[GT],NS=[301],REF=[8.0],RL=[16],RPA=[7.0
],RU=[GT],QUAL=[298676]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 76 SVs from 11 studies. See in: genome view

Remapped(Score: Perfect):9,465,872-9,465,887

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv2070298	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	9,465,872	9,465,887
nsv2070298	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	9,606,001	9,606,016

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv10746758	short tandem repeat	(GT) 7	Sequencing	Genotyping
nssv10746759	short tandem repeat	(GT) 8 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv10746758	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	9,465,872	9,465,887
nssv10746759	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	9,465,872	9,465,887
nssv10746758	Submitted genomic		GRCh37 (hg19)		NC_000002.11	Chr2	9,606,001	9,606,016
nssv10746759	Submitted genomic		GRCh37 (hg19)		NC_000002.11	Chr2	9,606,001	9,606,016

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

You are here: NCBI