Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv1915387

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:20

Description:MOTIF=[TAAA],NS=[301],REF=[5.0],RL=[20],RPA=[]
,RU=[TAAA],QUAL=[281629]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 212 SVs from 25 studies. See in: genome view

Remapped(Score: Perfect):43,740,883-43,740,902

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1915387	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	43,740,883	43,740,902
nsv1915387	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187618.1	Chr18\|NT_1 87618.1	32,980	32,999
nsv1915387	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000018.9	Chr18	41,320,848	41,320,867

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv10532479	short tandem repeat	(TAAA) 5 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv10532479	Remapped	Perfect	GRCh38.p12	Second Pass	NT_187618.1	Chr18\|NT_1 87618.1	32,980	32,999
nssv10532479	Remapped	Perfect	GRCh38.p12	First Pass	NC_000018.10	Chr18	43,740,883	43,740,902
nssv10532479	Submitted genomic		GRCh37 (hg19)		NC_000018.9	Chr18	41,320,848	41,320,867

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

You are here: NCBI