nsv1874232
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19
- Description:MOTIF=[GTAG],NS=[301],REF=[4.75],RL=[19],RU=[G
TAG],RPA=[6.75],QUAL=[187078] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 129 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1874232 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 42,772,364 | 42,772,382 |
| nsv1874232 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 40,924,382 | 40,924,400 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10384871 | short tandem repeat | (GTAG) 6.75 | Sequencing | Genotyping |
| nssv10384872 | short tandem repeat | (GTAG) 4.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10384871 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 42,772,364 | 42,772,382 |
| nssv10384872 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 42,772,364 | 42,772,382 |
| nssv10384871 | Submitted genomic | GRCh37 (hg19) | NC_000017.10 | Chr17 | 40,924,382 | 40,924,400 | ||
| nssv10384872 | Submitted genomic | GRCh37 (hg19) | NC_000017.10 | Chr17 | 40,924,382 | 40,924,400 |