nsv1586151
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12
- Description:MOTIF=[T],NS=[301],REF=[12.0],RL=[12],RPA=[13.
0,14.0],RU=[T],QUAL=[123172] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 54 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 54 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1586151 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 58,618,577 | 58,618,588 |
| nsv1586151 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 58,386,050 | 58,386,061 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9340724 | short tandem repeat | (T) 13 | Sequencing | Genotyping |
| nssv9340725 | short tandem repeat | (T) 14 | Sequencing | Genotyping |
| nssv9340726 | short tandem repeat | (T) 12 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9340724 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 58,618,577 | 58,618,588 |
| nssv9340725 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 58,618,577 | 58,618,588 |
| nssv9340726 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 58,618,577 | 58,618,588 |
| nssv9340724 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 58,386,050 | 58,386,061 | ||
| nssv9340725 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 58,386,050 | 58,386,061 | ||
| nssv9340726 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 58,386,050 | 58,386,061 |