estd59 (1000 Genomes Consortium Pilot Project)

Organism:
Human
Study Type:
Control Set
Submitter:
Richard Durbin
Submitter URL:
http://www.1000genomes.org/
Description:
This study contains all structural variation data for the first phase of the 1000 Genomes Project (1K Genomes, 1KG). This includes Deletions, Mobile Element Insertions, Tandem Duplications, and Novel Sequences for both Pilot1 and Pilot2 on all chromosomes. Pilot1 structural variations were determined by low coverage re-sequencing of HapMap samples. Pilot2 structural variations were determined by high coverage re-sequencing of two HapMap trios (YRI and CEU).
Project:
PRJNA28889
Publication(s):
1000 Genomes Project Consortium et al. 2010

Detailed Information: Download 228871 Variant Regions, Download 2158011 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p2 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr116,855160,151RemappedNC_000001.11
NC_000002.12Chr217,247165,280RemappedNC_000002.12
NC_000003.12Chr313,331125,637RemappedNC_000003.12
NC_000004.12Chr415,264158,791RemappedNC_000004.12
NC_000005.10Chr513,267133,306RemappedNC_000005.10
NC_000006.12Chr613,781140,493RemappedNC_000006.12
NC_000007.14Chr713,392123,938RemappedNC_000007.14
NC_000008.11Chr811,465114,278RemappedNC_000008.11
NC_000009.12Chr911,691104,006RemappedNC_000009.12
NC_000010.11Chr1010,033101,075RemappedNC_000010.11
NC_000011.10Chr1110,659101,646RemappedNC_000011.10
NC_000012.12Chr129,97694,796RemappedNC_000012.12
NC_000013.11Chr137,81680,806RemappedNC_000013.11
NC_000014.9Chr147,46381,139RemappedNC_000014.9
NC_000015.10Chr155,89357,733RemappedNC_000015.10
NC_000016.10Chr167,48159,812RemappedNC_000016.10
NC_000017.11Chr177,60867,680RemappedNC_000017.11
NC_000018.10Chr186,47961,932RemappedNC_000018.10
NC_000019.10Chr196,99554,717RemappedNC_000019.10
NC_000020.11Chr204,94245,069RemappedNC_000020.11
NC_000021.9Chr213,65528,894RemappedNC_000021.9
NC_000022.11Chr224,60142,927RemappedNC_000022.11
NC_000023.11ChrX6,47834,251RemappedNC_000023.11
NC_000024.10ChrY9031,517RemappedNC_000024.10
NT_187513.1Unplaced|NT_187513.12147RemappedNT_187513.1
NT_187502.1Unplaced|NT_187502.12277RemappedNT_187502.1
NT_187361.1Chr1|NT_187361.13265RemappedNT_187361.1
NT_187367.1Chr1|NT_187367.144RemappedNT_187367.1
NT_113793.3Chr4|NT_113793.379141RemappedNT_113793.3
NT_113796.3Chr14|NT_113796.34085RemappedNT_113796.3
NT_187382.1Chr15|NT_187382.148RemappedNT_187382.1
NT_187383.1Chr16|NT_187383.1717RemappedNT_187383.1
NT_167213.1Unplaced|NT_167213.144RemappedNT_167213.1
NT_187514.1Chr1|NT_187514.1420RemappedNT_187514.1
NT_187515.1Chr1|NT_187515.161333RemappedNT_187515.1
NT_187516.1Chr1|NT_187516.166316RemappedNT_187516.1
NT_187517.1Chr1|NT_187517.125112RemappedNT_187517.1
NT_187518.1Chr1|NT_187518.142229RemappedNT_187518.1
NT_187519.1Chr1|NT_187519.140340RemappedNT_187519.1
NT_187520.1Chr1|NT_187520.1832RemappedNT_187520.1
NT_187521.1Chr1|NT_187521.117282RemappedNT_187521.1
NT_187646.1Chr1|NT_187646.135210RemappedNT_187646.1
NW_003315906.1Chr1|NW_003315906.124RemappedNW_003315906.1
NW_003315907.2Chr1|NW_003315907.222190RemappedNW_003315907.2
NW_011332687.1Chr1|NW_011332687.144238RemappedNW_011332687.1
NW_011332688.1Chr1|NW_011332688.137542RemappedNW_011332688.1
NW_009646195.1Chr1|NW_009646195.11127RemappedNW_009646195.1
NW_009646196.1Chr1|NW_009646196.1422RemappedNW_009646196.1
NW_009646194.1Chr1|NW_009646194.146241RemappedNW_009646194.1
NT_187522.1Chr2|NT_187522.112236RemappedNT_187522.1
NT_187523.1Chr2|NT_187523.131170RemappedNT_187523.1
NT_187524.1Chr2|NT_187524.1823RemappedNT_187524.1
NT_187525.1Chr2|NT_187525.115103RemappedNT_187525.1
NT_187526.1Chr2|NT_187526.11499RemappedNT_187526.1
NT_187527.1Chr2|NT_187527.154448RemappedNT_187527.1
NT_187528.1Chr2|NT_187528.113123RemappedNT_187528.1
NT_187529.1Chr2|NT_187529.1105915RemappedNT_187529.1
NT_187530.1Chr2|NT_187530.18122RemappedNT_187530.1
NT_187531.1Chr2|NT_187531.111RemappedNT_187531.1
NT_187647.1Chr2|NT_187647.131170RemappedNT_187647.1
NT_187648.1Chr2|NT_187648.1616RemappedNT_187648.1
NW_003315908.1Chr2|NW_003315908.11250RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.122RemappedNW_003315909.1
NW_003571033.2Chr2|NW_003571033.243RemappedNW_003571033.2
NW_011332689.1Chr2|NW_011332689.133208RemappedNW_011332689.1
NW_011332690.1Chr2|NW_011332690.11233RemappedNW_011332690.1
NT_187532.1Chr3|NT_187532.181300RemappedNT_187532.1
NT_187533.1Chr3|NT_187533.1813RemappedNT_187533.1
NT_187534.1Chr3|NT_187534.118102RemappedNT_187534.1
NT_187535.1Chr3|NT_187535.11421RemappedNT_187535.1
NT_187536.1Chr3|NT_187536.11639RemappedNT_187536.1
NT_187537.1Chr3|NT_187537.127327RemappedNT_187537.1
NT_187538.1Chr3|NT_187538.1520RemappedNT_187538.1
NT_187539.1Chr3|NT_187539.137233RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.175243RemappedNT_187649.1
NT_187678.1Chr3|NT_187678.174235RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.174226RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.181295RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.175227RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.179229RemappedNT_187691.1
NW_003315913.1Chr3|NW_003315913.156RemappedNW_003315913.1
NW_003871060.2Chr3|NW_003871060.2618RemappedNW_003871060.2
NW_009646197.1Chr3|NW_009646197.118170RemappedNW_009646197.1
NW_009646198.1Chr3|NW_009646198.17131RemappedNW_009646198.1
NW_011332691.1Chr3|NW_011332691.128415RemappedNW_011332691.1
NT_167250.2Chr4|NT_167250.240766RemappedNT_167250.2
NT_187540.1Chr4|NT_187540.118212RemappedNT_187540.1
NT_187541.1Chr4|NT_187541.1711RemappedNT_187541.1
NT_187542.1Chr4|NT_187542.116210RemappedNT_187542.1
NT_187543.1Chr4|NT_187543.11011,027RemappedNT_187543.1
NT_187544.1Chr4|NT_187544.122308RemappedNT_187544.1
NT_187545.1Chr4|NT_187545.137315RemappedNT_187545.1
NT_187650.1Chr4|NT_187650.1125503RemappedNT_187650.1
NT_187679.1Chr4|NT_187679.12212,253RemappedNT_187679.1
NW_003315914.1Chr4|NW_003315914.111RemappedNW_003315914.1
NW_003315915.1Chr4|NW_003315915.1691,491RemappedNW_003315915.1
NT_187546.1Chr5|NT_187546.124190RemappedNT_187546.1
NT_187547.1Chr5|NT_187547.148211RemappedNT_187547.1
NT_187548.1Chr5|NT_187548.11161,094RemappedNT_187548.1
NT_187549.1Chr5|NT_187549.117329RemappedNT_187549.1
NT_187550.1Chr5|NT_187550.148483RemappedNT_187550.1
NT_187551.1Chr5|NT_187551.138RemappedNT_187551.1
NT_187651.1Chr5|NT_187651.11361,721RemappedNT_187651.1
NT_187652.1Chr5|NT_187652.126205RemappedNT_187652.1
NW_003315917.2Chr5|NW_003315917.235259RemappedNW_003315917.2
NW_003315919.1Chr5|NW_003315919.144RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.132RemappedNW_003315920.1
NW_003571036.1Chr5|NW_003571036.11029RemappedNW_003571036.1
NW_009646199.1Chr5|NW_009646199.122480RemappedNW_009646199.1
NT_113891.3Chr6|NT_113891.3436RemappedNT_113891.3
NT_167244.2Chr6|NT_167244.272719RemappedNT_167244.2
NT_167245.2Chr6|NT_167245.23153,147RemappedNT_167245.2
NT_167246.2Chr6|NT_167246.25285,133RemappedNT_167246.2
NT_167247.2Chr6|NT_167247.23252,740RemappedNT_167247.2
NT_167248.2Chr6|NT_167248.211RemappedNT_167248.2
NT_167249.2Chr6|NT_167249.24074,243RemappedNT_167249.2
NT_187552.1Chr6|NT_187552.150413RemappedNT_187552.1
NT_187553.1Chr6|NT_187553.151256RemappedNT_187553.1
NT_187554.1Chr6|NT_187554.1870RemappedNT_187554.1
NT_187555.1Chr6|NT_187555.123392RemappedNT_187555.1
NT_187556.1Chr6|NT_187556.133267RemappedNT_187556.1
NT_187557.1Chr6|NT_187557.11317RemappedNT_187557.1
NT_187692.1Chr6|NT_187692.139RemappedNT_187692.1
NW_003315921.1Chr6|NW_003315921.1754RemappedNW_003315921.1
NW_004166862.2Chr6|NW_004166862.237467RemappedNW_004166862.2
NW_009646200.1Chr6|NW_009646200.151712RemappedNW_009646200.1
NT_187558.1Chr7|NT_187558.144582RemappedNT_187558.1
NT_187559.1Chr7|NT_187559.1928RemappedNT_187559.1
NT_187560.1Chr7|NT_187560.1125720RemappedNT_187560.1
NT_187561.1Chr7|NT_187561.133RemappedNT_187561.1
NT_187562.1Chr7|NT_187562.11712,092RemappedNT_187562.1
NT_187563.1Chr7|NT_187563.138245RemappedNT_187563.1
NT_187564.1Chr7|NT_187564.131180RemappedNT_187564.1
NT_187653.1Chr7|NT_187653.156643RemappedNT_187653.1
NW_003315922.2Chr7|NW_003315922.2815RemappedNW_003315922.2
NT_187565.1Chr8|NT_187565.186639RemappedNT_187565.1
NT_187566.1Chr8|NT_187566.118170RemappedNT_187566.1
NT_187567.1Chr8|NT_187567.125296RemappedNT_187567.1
NT_187568.1Chr8|NT_187568.182693RemappedNT_187568.1
NT_187569.1Chr8|NT_187569.17185RemappedNT_187569.1
NT_187570.1Chr8|NT_187570.11972,872RemappedNT_187570.1
NT_187571.1Chr8|NT_187571.148579RemappedNT_187571.1
NT_187572.1Chr8|NT_187572.11891RemappedNT_187572.1
NT_187573.1Chr8|NT_187573.11125RemappedNT_187573.1
NT_187574.1Chr8|NT_187574.140193RemappedNT_187574.1
NT_187575.1Chr8|NT_187575.1221RemappedNT_187575.1
NT_187576.1Chr8|NT_187576.12381,963RemappedNT_187576.1
NT_187577.1Chr8|NT_187577.147305RemappedNT_187577.1
NT_187654.1Chr8|NT_187654.148767RemappedNT_187654.1
NT_187655.1Chr8|NT_187655.152244RemappedNT_187655.1
NT_187680.1Chr8|NT_187680.145374RemappedNT_187680.1
NT_187578.1Chr9|NT_187578.119185RemappedNT_187578.1
NW_003315928.1Chr9|NW_003315928.122RemappedNW_003315928.1
NW_003315929.1Chr9|NW_003315929.125RemappedNW_003315929.1
NW_003315930.1Chr9|NW_003315930.11680RemappedNW_003315930.1
NW_003315931.1Chr9|NW_003315931.123RemappedNW_003315931.1
NW_009646201.1Chr9|NW_009646201.148531RemappedNW_009646201.1
NT_187579.1Chr10|NT_187579.131216RemappedNT_187579.1
NT_187580.1Chr10|NT_187580.1511RemappedNT_187580.1
NW_003315934.1Chr10|NW_003315934.118323RemappedNW_003315934.1
NW_003315935.1Chr10|NW_003315935.11471RemappedNW_003315935.1
NW_009646202.1Chr10|NW_009646202.11442RemappedNW_009646202.1
NT_187581.1Chr11|NT_187581.146728RemappedNT_187581.1
NT_187582.1Chr11|NT_187582.1732RemappedNT_187582.1
NT_187583.1Chr11|NT_187583.138344RemappedNT_187583.1
NT_187584.1Chr11|NT_187584.139451RemappedNT_187584.1
NT_187585.1Chr11|NT_187585.133183RemappedNT_187585.1
NT_187586.1Chr11|NT_187586.172507RemappedNT_187586.1
NT_187656.1Chr11|NT_187656.12396RemappedNT_187656.1
NT_187657.1Chr11|NT_187657.130229RemappedNT_187657.1
NT_187681.1Chr11|NT_187681.153247RemappedNT_187681.1
NW_003315936.1Chr11|NW_003315936.16128RemappedNW_003315936.1
NW_003871073.1Chr11|NW_003871073.1421RemappedNW_003871073.1
NW_003871074.1Chr11|NW_003871074.1936RemappedNW_003871074.1
NW_009646203.1Chr11|NW_009646203.1457RemappedNW_009646203.1
NW_011332695.1Chr11|NW_011332695.138344RemappedNW_011332695.1
NT_187587.1Chr12|NT_187587.124228RemappedNT_187587.1
NT_187588.1Chr12|NT_187588.122RemappedNT_187588.1
NT_187589.1Chr12|NT_187589.1938RemappedNT_187589.1
NT_187590.1Chr12|NT_187590.1931RemappedNT_187590.1
NT_187591.1Chr12|NT_187591.114107RemappedNT_187591.1
NT_187658.1Chr12|NT_187658.192895RemappedNT_187658.1
NW_003315938.1Chr12|NW_003315938.1352RemappedNW_003315938.1
NW_003315939.2Chr12|NW_003315939.211370RemappedNW_003315939.2
NW_003315940.1Chr12|NW_003315940.138440RemappedNW_003315940.1
NW_003315941.1Chr12|NW_003315941.119147RemappedNW_003315941.1
NW_003315942.2Chr12|NW_003315942.243RemappedNW_003315942.2
NW_003571049.1Chr12|NW_003571049.125139RemappedNW_003571049.1
NW_003571050.1Chr12|NW_003571050.1961,321RemappedNW_003571050.1
NW_011332696.1Chr12|NW_011332696.156286RemappedNW_011332696.1
NW_009646204.1Chr12|NW_009646204.1967RemappedNW_009646204.1
NW_011332697.1Chr12|NW_011332697.1943RemappedNW_011332697.1
NT_187592.1Chr13|NT_187592.171444RemappedNT_187592.1
NT_187593.1Chr13|NT_187593.166RemappedNT_187593.1
NT_187594.1Chr13|NT_187594.140424RemappedNT_187594.1
NT_187595.1Chr13|NT_187595.111159RemappedNT_187595.1
NT_187596.1Chr13|NT_187596.114RemappedNT_187596.1
NT_187597.1Chr13|NT_187597.134RemappedNT_187597.1
NW_011332698.1Chr13|NW_011332698.11221,063RemappedNW_011332698.1
NW_009646205.1Chr13|NW_009646205.1517RemappedNW_009646205.1
NW_011332700.1Chr13|NW_011332700.123127RemappedNW_011332700.1
NW_011332699.1Chr13|NW_011332699.11556RemappedNW_011332699.1
NT_187598.1Chr14|NT_187598.116286RemappedNT_187598.1
NT_187599.1Chr14|NT_187599.128135RemappedNT_187599.1
NT_187600.1Chr14|NT_187600.195220,667RemappedNT_187600.1
NT_187601.1Chr14|NT_187601.191561RemappedNT_187601.1
NT_187602.1Chr15|NT_187602.159RemappedNT_187602.1
NT_187603.1Chr15|NT_187603.126202RemappedNT_187603.1
NT_187604.1Chr15|NT_187604.173193RemappedNT_187604.1
NT_187605.1Chr15|NT_187605.129159RemappedNT_187605.1
NT_187606.1Chr15|NT_187606.169662RemappedNT_187606.1
NT_187659.1Chr15|NT_187659.119157RemappedNT_187659.1
NT_187660.1Chr15|NT_187660.12512,141RemappedNT_187660.1
NW_003315943.1Chr15|NW_003315943.134109RemappedNW_003315943.1
NW_003315944.2Chr15|NW_003315944.219105RemappedNW_003315944.2
NW_011332701.1Chr15|NW_011332701.12712,278RemappedNW_011332701.1
NT_187607.1Chr16|NT_187607.11281,195RemappedNT_187607.1
NT_187608.1Chr16|NT_187608.115104RemappedNT_187608.1
NT_187609.1Chr16|NT_187609.1513RemappedNT_187609.1
NT_187610.1Chr16|NT_187610.118360RemappedNT_187610.1
NW_003315945.1Chr16|NW_003315945.11267RemappedNW_003315945.1
NW_003315946.1Chr16|NW_003315946.1613RemappedNW_003315946.1
NT_167251.2Chr17|NT_167251.21281,465RemappedNT_167251.2
NT_187384.1Chr17|NT_187384.111RemappedNT_187384.1
NT_187611.1Chr17|NT_187611.134388RemappedNT_187611.1
NT_187612.1Chr17|NT_187612.185532RemappedNT_187612.1
NT_187613.1Chr17|NT_187613.157345RemappedNT_187613.1
NT_187614.1Chr17|NT_187614.14535,761RemappedNT_187614.1
NT_187615.1Chr17|NT_187615.118177RemappedNT_187615.1
NT_187616.1Chr17|NT_187616.1518RemappedNT_187616.1
NT_187661.1Chr17|NT_187661.12622,831RemappedNT_187661.1
NT_187662.1Chr17|NT_187662.198996RemappedNT_187662.1
NT_187663.1Chr17|NT_187663.11451,356RemappedNT_187663.1
NT_187664.1Chr17|NT_187664.130246RemappedNT_187664.1
NW_003315952.3Chr17|NW_003315952.3124838RemappedNW_003315952.3
NW_003315953.2Chr17|NW_003315953.226189RemappedNW_003315953.2
NW_003315954.1Chr17|NW_003315954.124297RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.138502RemappedNW_003315955.1
NW_003871091.1Chr17|NW_003871091.144RemappedNW_003871091.1
NW_003871092.1Chr17|NW_003871092.11370RemappedNW_003871092.1
NW_003871093.1Chr17|NW_003871093.140344RemappedNW_003871093.1
NT_187617.1Chr18|NT_187617.142255RemappedNT_187617.1
NT_187618.1Chr18|NT_187618.177RemappedNT_187618.1
NT_187665.1Chr18|NT_187665.159400RemappedNT_187665.1
NT_187666.1Chr18|NT_187666.125180RemappedNT_187666.1
NW_003315956.1Chr18|NW_003315956.128194RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.135RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.148321RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.118225RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.158RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.130221RemappedNW_003315961.1
NT_113949.2Chr19|NT_113949.2781RemappedNT_113949.2
NT_187619.1Chr19|NT_187619.14968RemappedNT_187619.1
NT_187620.1Chr19|NT_187620.11846RemappedNT_187620.1
NT_187621.1Chr19|NT_187621.113161RemappedNT_187621.1
NT_187622.1Chr19|NT_187622.129304RemappedNT_187622.1
NT_187636.1Chr19|NT_187636.141810RemappedNT_187636.1
NT_187637.1Chr19|NT_187637.1511,002RemappedNT_187637.1
NT_187638.1Chr19|NT_187638.134385RemappedNT_187638.1
NT_187639.1Chr19|NT_187639.1511,002RemappedNT_187639.1
NT_187640.1Chr19|NT_187640.142893RemappedNT_187640.1
NT_187641.1Chr19|NT_187641.139675RemappedNT_187641.1
NT_187642.1Chr19|NT_187642.129286RemappedNT_187642.1
NT_187643.1Chr19|NT_187643.1511,002RemappedNT_187643.1
NT_187644.1Chr19|NT_187644.112102RemappedNT_187644.1
NT_187645.1Chr19|NT_187645.147982RemappedNT_187645.1
NT_187668.1Chr19|NT_187668.146813RemappedNT_187668.1
NT_187669.1Chr19|NT_187669.1511,002RemappedNT_187669.1
NT_187670.1Chr19|NT_187670.116265RemappedNT_187670.1
NT_187671.1Chr19|NT_187671.148932RemappedNT_187671.1
NT_187672.1Chr19|NT_187672.131702RemappedNT_187672.1
NT_187673.1Chr19|NT_187673.1511,002RemappedNT_187673.1
NT_187674.1Chr19|NT_187674.144837RemappedNT_187674.1
NT_187675.1Chr19|NT_187675.136479RemappedNT_187675.1
NT_187676.1Chr19|NT_187676.148932RemappedNT_187676.1
NT_187677.1Chr19|NT_187677.133375RemappedNT_187677.1
NT_187683.1Chr19|NT_187683.147931RemappedNT_187683.1
NT_187684.1Chr19|NT_187684.147999RemappedNT_187684.1
NT_187685.1Chr19|NT_187685.147907RemappedNT_187685.1
NT_187686.1Chr19|NT_187686.149911RemappedNT_187686.1
NT_187687.1Chr19|NT_187687.1511,002RemappedNT_187687.1
NT_187693.1Chr19|NT_187693.12352,626RemappedNT_187693.1
NW_003315962.1Chr19|NW_003315962.145211RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.188RemappedNW_003315963.1
NW_003315964.2Chr19|NW_003315964.224123RemappedNW_003315964.2
NW_003315965.1Chr19|NW_003315965.1866RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.11461,527RemappedNW_003571054.1
NW_003571055.2Chr19|NW_003571055.290587RemappedNW_003571055.2
NW_003571056.2Chr19|NW_003571056.261448RemappedNW_003571056.2
NW_003571057.2Chr19|NW_003571057.266554RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.259354RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.271770RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.11721,628RemappedNW_003571060.1
NW_003571061.2Chr19|NW_003571061.289714RemappedNW_003571061.2
NW_009646206.1Chr19|NW_009646206.131294RemappedNW_009646206.1
NT_187623.1Chr20|NT_187623.1601,192RemappedNT_187623.1
NT_187624.1Chr20|NT_187624.149325RemappedNT_187624.1
NT_187625.1Chr20|NT_187625.1977RemappedNT_187625.1
NW_003315966.2Chr20|NW_003315966.21156RemappedNW_003315966.2
NT_187626.1Chr21|NT_187626.143418RemappedNT_187626.1
NT_187627.1Chr21|NT_187627.1823RemappedNT_187627.1
NT_187628.1Chr21|NT_187628.124409RemappedNT_187628.1
NW_003315967.2Chr21|NW_003315967.268RemappedNW_003315967.2
NW_003315968.2Chr21|NW_003315968.224401RemappedNW_003315968.2
NW_003315969.2Chr21|NW_003315969.246RemappedNW_003315969.2
NW_003315970.2Chr21|NW_003315970.2419RemappedNW_003315970.2
NT_187629.1Chr22|NT_187629.11703,083RemappedNT_187629.1
NT_187630.1Chr22|NT_187630.11023RemappedNT_187630.1
NT_187631.1Chr22|NT_187631.1314RemappedNT_187631.1
NT_187632.1Chr22|NT_187632.126222RemappedNT_187632.1
NT_187633.1Chr22|NT_187633.11592,823RemappedNT_187633.1
NT_187682.1Chr22|NT_187682.128213RemappedNT_187682.1
NW_003315971.2Chr22|NW_003315971.222RemappedNW_003315971.2
NW_003315972.2Chr22|NW_003315972.217210RemappedNW_003315972.2
NW_004504305.1Chr22|NW_004504305.122RemappedNW_004504305.1
NT_187386.1Chr22|NT_187386.1415RemappedNT_187386.1
NW_009646207.1Chr22|NW_009646207.122RemappedNW_009646207.1
NT_187634.1ChrX|NT_187634.1127469RemappedNT_187634.1
NT_187635.1ChrX|NT_187635.1791RemappedNT_187635.1
NT_187667.1ChrX|NT_187667.1123429RemappedNT_187667.1
NW_009646209.1ChrY|NW_009646209.1347420RemappedNW_009646209.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr117,119160,945RemappedNC_000001.10
NC_000002.11Chr217,262165,447RemappedNC_000002.11
NC_000003.11Chr313,322125,485RemappedNC_000003.11
NC_000004.11Chr415,218158,692RemappedNC_000004.11
NC_000005.9Chr513,267133,306RemappedNC_000005.9
NC_000006.11Chr613,810140,719RemappedNC_000006.11
NC_000007.13Chr713,432124,356RemappedNC_000007.13
NC_000008.10Chr811,537114,992RemappedNC_000008.10
NC_000009.11Chr911,744104,192RemappedNC_000009.11
NC_000010.10Chr1010,086101,819RemappedNC_000010.10
NC_000011.9Chr1110,687102,291RemappedNC_000011.9
NC_000012.11Chr129,97194,892RemappedNC_000012.11
NC_000013.10Chr137,82380,832RemappedNC_000013.10
NC_000014.8Chr147,51782,809RemappedNC_000014.8
NC_000015.9Chr155,95258,173RemappedNC_000015.9
NC_000016.9Chr167,51459,448RemappedNC_000016.9
NC_000017.10Chr177,42466,993RemappedNC_000017.10
NC_000018.9Chr186,48861,940RemappedNC_000018.9
NC_000019.9Chr196,94854,336RemappedNC_000019.9
NC_000020.10Chr204,94345,076RemappedNC_000020.10
NC_000021.8Chr213,66029,048RemappedNC_000021.8
NC_000022.10Chr224,72045,055RemappedNC_000022.10
NC_000023.10ChrX6,54435,164RemappedNC_000023.10
NC_000024.9ChrY9101,519RemappedNC_000024.9
NW_003315903.1Chr1|NW_003315903.122183RemappedNW_003315903.1
NW_003315904.1Chr1|NW_003315904.11626RemappedNW_003315904.1
NW_003315906.1Chr1|NW_003315906.124RemappedNW_003315906.1
NW_003315907.1Chr1|NW_003315907.122190RemappedNW_003315907.1
NW_003571030.1Chr1|NW_003571030.11299RemappedNW_003571030.1
NW_003871055.3Chr1|NW_003871055.33413,931RemappedNW_003871055.3
NW_003871056.3Chr1|NW_003871056.31041,291RemappedNW_003871056.3
NW_003871057.1Chr1|NW_003871057.135270RemappedNW_003871057.1
NW_004070863.1Chr1|NW_004070863.111RemappedNW_004070863.1
NW_004070864.2Chr1|NW_004070864.2683RemappedNW_004070864.2
NW_003315908.1Chr2|NW_003315908.11250RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.122RemappedNW_003315909.1
NW_003571031.1Chr2|NW_003571031.11010RemappedNW_003571031.1
NW_003571032.1Chr2|NW_003571032.12325RemappedNW_003571032.1
NW_003571033.2Chr2|NW_003571033.243RemappedNW_003571033.2
NW_004504299.1Chr2|NW_004504299.136202RemappedNW_004504299.1
NW_003315910.1Chr3|NW_003315910.112133RemappedNW_003315910.1
NW_003315913.1Chr3|NW_003315913.156RemappedNW_003315913.1
NW_003871058.1Chr3|NW_003871058.130178RemappedNW_003871058.1
NW_003871059.1Chr3|NW_003871059.1736RemappedNW_003871059.1
NW_003871060.1Chr3|NW_003871060.1618RemappedNW_003871060.1
NW_004775426.1Chr3|NW_004775426.11131RemappedNW_004775426.1
NT_167250.1Chr4|NT_167250.140766RemappedNT_167250.1
NW_003315914.1Chr4|NW_003315914.111RemappedNW_003315914.1
NW_003315915.1Chr4|NW_003315915.1691,491RemappedNW_003315915.1
NW_003315916.1Chr4|NW_003315916.1523RemappedNW_003315916.1
NW_003571034.1Chr4|NW_003571034.186247RemappedNW_003571034.1
NW_003571035.1Chr4|NW_003571035.11648RemappedNW_003571035.1
NW_004775427.1Chr4|NW_004775427.172622RemappedNW_004775427.1
NW_003315917.2Chr5|NW_003315917.240698RemappedNW_003315917.2
NW_003315919.1Chr5|NW_003315919.144RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.132RemappedNW_003315920.1
NW_003571036.1Chr5|NW_003571036.11029RemappedNW_003571036.1
NW_003871061.1Chr5|NW_003871061.11081RemappedNW_003871061.1
NW_004775428.1Chr5|NW_004775428.150336RemappedNW_004775428.1
NT_113891.2Chr6|NT_113891.2436RemappedNT_113891.2
NT_167244.1Chr6|NT_167244.169696RemappedNT_167244.1
NT_167245.1Chr6|NT_167245.13153,147RemappedNT_167245.1
NT_167246.1Chr6|NT_167246.15174,992RemappedNT_167246.1
NT_167247.1Chr6|NT_167247.13242,737RemappedNT_167247.1
NT_167248.1Chr6|NT_167248.112142RemappedNT_167248.1
NT_167249.1Chr6|NT_167249.13964,102RemappedNT_167249.1
NW_003315921.1Chr6|NW_003315921.1754RemappedNW_003315921.1
NW_003871062.1Chr6|NW_003871062.11724RemappedNW_003871062.1
NW_004070866.1Chr6|NW_004070866.170526RemappedNW_004070866.1
NW_004166862.1Chr6|NW_004166862.137467RemappedNW_004166862.1
NW_004504300.1Chr6|NW_004504300.12394RemappedNW_004504300.1
NW_003315922.2Chr7|NW_003315922.2815RemappedNW_003315922.2
NW_003571037.1Chr7|NW_003571037.136185RemappedNW_003571037.1
NW_003571038.1Chr7|NW_003571038.148629RemappedNW_003571038.1
NW_003571039.1Chr7|NW_003571039.131206RemappedNW_003571039.1
NW_003571040.1Chr7|NW_003571040.11852,121RemappedNW_003571040.1
NW_003571041.1Chr7|NW_003571041.11675RemappedNW_003571041.1
NW_003871064.1Chr7|NW_003871064.12271,688RemappedNW_003871064.1
NW_003871065.1Chr7|NW_003871065.11420RemappedNW_003871065.1
NW_004775430.1Chr7|NW_004775430.14371RemappedNW_004775430.1
NW_003315923.1Chr8|NW_003315923.166489RemappedNW_003315923.1
NW_003315924.1Chr8|NW_003315924.140355RemappedNW_003315924.1
NW_003571042.1Chr8|NW_003571042.11581,164RemappedNW_003571042.1
NW_003871066.2Chr8|NW_003871066.222RemappedNW_003871066.2
NW_004775431.1Chr8|NW_004775431.144RemappedNW_004775431.1
NW_003315925.1Chr9|NW_003315925.145528RemappedNW_003315925.1
NW_003315926.1Chr9|NW_003315926.1633RemappedNW_003315926.1
NW_003315927.1Chr9|NW_003315927.11238RemappedNW_003315927.1
NW_003315928.1Chr9|NW_003315928.122RemappedNW_003315928.1
NW_003315929.1Chr9|NW_003315929.125RemappedNW_003315929.1
NW_003315930.1Chr9|NW_003315930.11680RemappedNW_003315930.1
NW_003315931.1Chr9|NW_003315931.123RemappedNW_003315931.1
NW_003871067.1Chr9|NW_003871067.12431RemappedNW_003871067.1
NW_004070867.1Chr9|NW_004070867.1311RemappedNW_004070867.1
NW_004070868.1Chr9|NW_004070868.131196RemappedNW_004070868.1
NW_004070869.1Chr9|NW_004070869.137290RemappedNW_004070869.1
NW_004504301.1Chr9|NW_004504301.11350RemappedNW_004504301.1
NW_003315932.1Chr10|NW_003315932.116285RemappedNW_003315932.1
NW_003315933.1Chr10|NW_003315933.1716RemappedNW_003315933.1
NW_003315934.1Chr10|NW_003315934.118323RemappedNW_003315934.1
NW_003315935.1Chr10|NW_003315935.11471RemappedNW_003315935.1
NW_003571043.1Chr10|NW_003571043.11450RemappedNW_003571043.1
NW_003871068.1Chr10|NW_003871068.12121,489RemappedNW_003871068.1
NW_003871069.1Chr10|NW_003871069.1983RemappedNW_003871069.1
NW_003871070.1Chr10|NW_003871070.122RemappedNW_003871070.1
NW_003871071.1Chr10|NW_003871071.147239RemappedNW_003871071.1
NW_004070870.1Chr10|NW_004070870.110130RemappedNW_004070870.1
NW_004504302.1Chr10|NW_004504302.1532RemappedNW_004504302.1
NW_004775432.1Chr10|NW_004775432.154840RemappedNW_004775432.1
NW_003315936.1Chr11|NW_003315936.16128RemappedNW_003315936.1
NW_003571045.1Chr11|NW_003571045.127212RemappedNW_003571045.1
NW_003571046.1Chr11|NW_003571046.145305RemappedNW_003571046.1
NW_003871072.2Chr11|NW_003871072.229149RemappedNW_003871072.2
NW_003871073.1Chr11|NW_003871073.1421RemappedNW_003871073.1
NW_003871074.1Chr11|NW_003871074.1936RemappedNW_003871074.1
NW_003871075.1Chr11|NW_003871075.126475RemappedNW_003871075.1
NW_003871076.1Chr11|NW_003871076.1457RemappedNW_003871076.1
NW_003871077.1Chr11|NW_003871077.116168RemappedNW_003871077.1
NW_003871078.1Chr11|NW_003871078.11223RemappedNW_003871078.1
NW_003871079.1Chr11|NW_003871079.11778RemappedNW_003871079.1
NW_003871080.1Chr11|NW_003871080.11431RemappedNW_003871080.1
NW_003871081.1Chr11|NW_003871081.1987RemappedNW_003871081.1
NW_003871082.1Chr11|NW_003871082.159RemappedNW_003871082.1
NW_004070871.1Chr11|NW_004070871.157316RemappedNW_004070871.1
NW_003315937.1Chr12|NW_003315937.161262RemappedNW_003315937.1
NW_003315938.1Chr12|NW_003315938.1352RemappedNW_003315938.1
NW_003315939.1Chr12|NW_003315939.111370RemappedNW_003315939.1
NW_003315940.1Chr12|NW_003315940.138440RemappedNW_003315940.1
NW_003315941.1Chr12|NW_003315941.119147RemappedNW_003315941.1
NW_003315942.2Chr12|NW_003315942.243RemappedNW_003315942.2
NW_003571048.1Chr12|NW_003571048.125153RemappedNW_003571048.1
NW_003571049.1Chr12|NW_003571049.133RemappedNW_003571049.1
NW_003571050.1Chr12|NW_003571050.126657RemappedNW_003571050.1
NW_003871083.2Chr12|NW_003871083.22052RemappedNW_003871083.2
NW_004504303.2Chr12|NW_004504303.216172RemappedNW_004504303.2
NW_003571051.1Chr13|NW_003571051.1224RemappedNW_003571051.1
NW_004166863.1Chr14|NW_004166863.11,04721,670RemappedNW_004166863.1
NW_003315943.1Chr15|NW_003315943.129207RemappedNW_003315943.1
NW_003315944.1Chr15|NW_003315944.119105RemappedNW_003315944.1
NW_003871084.1Chr15|NW_003871084.119421RemappedNW_003871084.1
NW_003315945.1Chr16|NW_003315945.11267RemappedNW_003315945.1
NW_003315946.1Chr16|NW_003315946.1613RemappedNW_003315946.1
NT_167251.1Chr17|NT_167251.1103952RemappedNT_167251.1
NW_003315947.1Chr17|NW_003315947.11222RemappedNW_003315947.1
NW_003315948.2Chr17|NW_003315948.243273RemappedNW_003315948.2
NW_003315949.1Chr17|NW_003315949.12863,664RemappedNW_003315949.1
NW_003315950.2Chr17|NW_003315950.289629RemappedNW_003315950.2
NW_003315951.1Chr17|NW_003315951.143RemappedNW_003315951.1
NW_003315953.1Chr17|NW_003315953.126189RemappedNW_003315953.1
NW_003315954.1Chr17|NW_003315954.124297RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.138502RemappedNW_003315955.1
NW_003571052.1Chr17|NW_003571052.111109RemappedNW_003571052.1
NW_003871086.1Chr17|NW_003871086.171402RemappedNW_003871086.1
NW_003871087.1Chr17|NW_003871087.136467RemappedNW_003871087.1
NW_003871088.1Chr17|NW_003871088.129294RemappedNW_003871088.1
NW_003871089.1Chr17|NW_003871089.133237RemappedNW_003871089.1
NW_003871090.1Chr17|NW_003871090.132353RemappedNW_003871090.1
NW_003871091.1Chr17|NW_003871091.144RemappedNW_003871091.1
NW_003871092.1Chr17|NW_003871092.1542RemappedNW_003871092.1
NW_003871093.1Chr17|NW_003871093.132316RemappedNW_003871093.1
NW_004070872.2Chr17|NW_004070872.22121,765RemappedNW_004070872.2
NW_004166864.2Chr17|NW_004166864.2917RemappedNW_004166864.2
NW_004775433.1Chr17|NW_004775433.133599RemappedNW_004775433.1
NW_003315956.1Chr18|NW_003315956.128194RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.135RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.148321RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.118225RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.158RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.137225RemappedNW_003315961.1
NW_003315962.1Chr19|NW_003315962.145211RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.188RemappedNW_003315963.1
NW_003315964.2Chr19|NW_003315964.225124RemappedNW_003315964.2
NW_003315965.1Chr19|NW_003315965.1866RemappedNW_003315965.1
NW_003571053.2Chr19|NW_003571053.21161,286RemappedNW_003571053.2
NW_003571060.1Chr19|NW_003571060.1778RemappedNW_003571060.1
NW_003571061.1Chr19|NW_003571061.1719RemappedNW_003571061.1
NW_003871094.1Chr19|NW_003871094.131242RemappedNW_003871094.1
NW_004166865.1Chr19|NW_004166865.11371,665RemappedNW_004166865.1
NW_004775434.1Chr19|NW_004775434.164418RemappedNW_004775434.1
NW_003315966.1Chr20|NW_003315966.11156RemappedNW_003315966.1
NW_003571063.2Chr20|NW_003571063.230294RemappedNW_003571063.2
NW_003871095.1Chr20|NW_003871095.111RemappedNW_003871095.1
NW_004504304.1Chr20|NW_004504304.128321RemappedNW_004504304.1
NW_003315967.1Chr21|NW_003315967.168RemappedNW_003315967.1
NW_003315968.1Chr21|NW_003315968.124401RemappedNW_003315968.1
NW_003315969.1Chr21|NW_003315969.146RemappedNW_003315969.1
NW_003315970.1Chr21|NW_003315970.1419RemappedNW_003315970.1
NW_004775435.1Chr21|NW_004775435.149196RemappedNW_004775435.1
NW_003315971.2Chr22|NW_003315971.239RemappedNW_003315971.2
NW_003315972.1Chr22|NW_003315972.117210RemappedNW_003315972.1
NW_003871096.1Chr22|NW_003871096.126149RemappedNW_003871096.1
NW_004070873.1Chr22|NW_004070873.11476RemappedNW_004070873.1
NW_004070874.1Chr22|NW_004070874.118141RemappedNW_004070874.1
NW_004070875.1Chr22|NW_004070875.11639RemappedNW_004070875.1
NW_003571064.2ChrX|NW_003571064.2106959RemappedNW_003571064.2
NW_003871098.1ChrX|NW_003871098.133205RemappedNW_003871098.1
NW_003871099.1ChrX|NW_003871099.155RemappedNW_003871099.1
NW_003871100.1ChrX|NW_003871100.156111RemappedNW_003871100.1
NW_003871101.3ChrX|NW_003871101.33467RemappedNW_003871101.3
NW_003871102.1ChrX|NW_003871102.111RemappedNW_003871102.1
NW_003871103.3ChrX|NW_003871103.3188573RemappedNW_003871103.3
NW_004070877.1ChrX|NW_004070877.1114276RemappedNW_004070877.1
NW_004070878.1ChrX|NW_004070878.128123RemappedNW_004070878.1
NW_004070879.1ChrX|NW_004070879.178RemappedNW_004070879.1
NW_004070880.2ChrX|NW_004070880.2120463RemappedNW_004070880.2
NW_004070881.1ChrX|NW_004070881.12070RemappedNW_004070881.1
NW_004070882.1ChrX|NW_004070882.11532RemappedNW_004070882.1
NW_004070883.1ChrX|NW_004070883.1622RemappedNW_004070883.1
NW_004070884.1ChrX|NW_004070884.122RemappedNW_004070884.1
NW_004070885.1ChrX|NW_004070885.11013RemappedNW_004070885.1
NW_004070886.1ChrX|NW_004070886.11965RemappedNW_004070886.1
NW_004070887.1ChrX|NW_004070887.153473RemappedNW_004070887.1
NW_004070888.1ChrX|NW_004070888.145230RemappedNW_004070888.1
NW_004070889.1ChrX|NW_004070889.183343RemappedNW_004070889.1
NW_004070890.2ChrX|NW_004070890.23322,642RemappedNW_004070890.2
NW_004070891.1ChrX|NW_004070891.13387RemappedNW_004070891.1
NW_004070892.1ChrX|NW_004070892.12959RemappedNW_004070892.1
NW_004070893.1ChrX|NW_004070893.146RemappedNW_004070893.1
NW_004166866.1ChrX|NW_004166866.12231RemappedNW_004166866.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.9Chr117,147161,115SubmittedNC_000001.9
NC_000002.10Chr217,279165,548SubmittedNC_000002.10
NC_000003.10Chr313,324125,494SubmittedNC_000003.10
NC_000004.10Chr415,321160,160SubmittedNC_000004.10
NC_000005.8Chr513,270133,329SubmittedNC_000005.8
NC_000006.10Chr613,817140,768SubmittedNC_000006.10
NC_000007.12Chr713,511125,559SubmittedNC_000007.12
NC_000008.9Chr811,574115,335SubmittedNC_000008.9
NC_000009.10Chr911,754104,272SubmittedNC_000009.10
NC_000010.9Chr1010,114102,336SubmittedNC_000010.9
NC_000011.8Chr1110,697102,351SubmittedNC_000011.8
NC_000012.10Chr129,99795,046SubmittedNC_000012.10
NC_000013.9Chr137,82380,832SubmittedNC_000013.9
NC_000014.7Chr147,52682,909SubmittedNC_000014.7
NC_000015.8Chr155,96758,222SubmittedNC_000015.8
NC_000016.8Chr167,51559,463SubmittedNC_000016.8
NC_000017.9Chr177,85671,362SubmittedNC_000017.9
NC_000018.8Chr186,48861,940SubmittedNC_000018.8
NC_000019.8Chr197,09156,061SubmittedNC_000019.8
NC_000020.9Chr204,94445,084SubmittedNC_000020.9
NC_000021.7Chr213,66029,048SubmittedNC_000021.7
NC_000022.9Chr224,73145,050SubmittedNC_000022.9
NC_000023.9ChrX6,55435,200SubmittedNC_000023.9
NC_000024.8ChrY9111,527SubmittedNC_000024.8

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.9Chr117,14716,575282020504161,115154,94142321605,940
NC_000002.10Chr217,27917,12514431780165,548164,636105361101345
NC_000003.10Chr313,32413,1983614274125,494124,868185279405
NC_000004.10Chr415,32114,986472242224160,160155,953461969622,688
NC_000005.8Chr513,27013,08925363117133,329131,92528203231,150
NC_000006.10Chr613,81712,8291567960140,768131,0864624499,563
NC_000007.12Chr713,51112,758886925571125,559120,2435822073454,182
NC_000008.9Chr811,57411,244363015249115,335112,796772702601,932
NC_000009.10Chr911,75411,458213510230104,272102,536229108801,319
NC_000010.9Chr1010,1149,617293928401102,33698,033801605173,546
NC_000011.8Chr1110,69710,4013153275102,351100,1781088192,056
NC_000012.10Chr129,9979,784111219995,04692,7028150162,170
NC_000013.9Chr137,8237,820100280,83280,80440024
NC_000014.7Chr147,5266,42822731,06682,90960,941125821721,744
NC_000015.8Chr155,9675,8193927136958,22257,13617714140728
NC_000016.8Chr167,5157,4750623259,46359,3380516104
NC_000017.9Chr177,8566,907153753368871,36262,3821,3284773386,837
NC_000018.8Chr186,4886,33423014961,94060,941220995
NC_000019.8Chr197,0916,7244912130556,06153,35915214382,399
NC_000020.9Chr204,9444,8489218445,08444,2222028832
NC_000021.7Chr213,6603,5675108729,04828,412510630
NC_000022.9Chr224,7314,63539137145,05044,4623952524
NC_000023.9ChrX6,5545,159102051,36035,20028,22410108146,844
NC_000024.8ChrY911898102101,5271,50511380
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.9Chr117,14716,177324130101415161,115154,1122,9397215162,827
NC_000002.10Chr217,27916,6561917137324165,548159,9572,1665853062,534
NC_000003.10Chr313,32412,97665211261125,494123,05057834181,517
NC_000004.10Chr415,32114,6621011942497160,160152,504841939625,760
NC_000005.8Chr513,27012,76532363434133,329128,75746203234,300
NC_000006.10Chr613,81712,6046420361,093140,768128,75730912327511,304
NC_000007.12Chr713,51112,73619912363390125,559120,1141,0284718223,124
NC_000008.9Chr811,57410,580586126849115,335105,6472796802928,437
NC_000009.10Chr911,75411,3071981203693104,272101,3201,645302196809
NC_000010.9Chr1010,1149,7871046059104102,33699,6325832001,181740
NC_000011.8Chr1110,69710,275433429316102,35198,4213591736472,751
NC_000012.10Chr129,9979,608582135595,04690,921191912503,665
NC_000013.9Chr137,8237,55040026980,83278,55662002,214
NC_000014.7Chr147,5266,16216073521,07982,90957,8901,6176691,23521,498
NC_000015.8Chr155,9675,46138231243358,22254,63931365453,160
NC_000016.8Chr167,5157,2368196219059,46357,37014212901,768
NC_000017.9Chr177,8566,53018484421,01671,36259,1861,7003794559,642
NC_000018.8Chr186,4886,265132919961,94060,58818281,324
NC_000019.8Chr197,0916,54394291740856,06151,9274973151843,138
NC_000020.9Chr204,9444,779258312945,08443,3204454161,650
NC_000021.7Chr213,6603,5011512612629,04827,46930561551,338
NC_000022.9Chr224,7314,114155625834245,05036,9091,4363688405,497
NC_000023.9ChrX6,5545,982288747613435,20032,567834290949560
NC_000024.8ChrY91155812243351,5271,1031495396

Samplesets

Number of Samplesets: 1

Name:
Individual samples
Size:
185
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1 (displaying 100 of the 185 samples)
    Sample IDCell TypeSubject ID SexEthnicitySubject AgeSubject Phenotype
    SAMN00110481B-LymphocyteNA12762MaleCaucasianNot reported
    SAMN00001577B-LymphocyteNA18489FemaleNot reported
    SAMN00801704B-LymphocyteNA12761FemaleCaucasianNot reported
    SAMN00001576B-LymphocyteNA18486MaleNot reported
    SAMN00001534B-LymphocyteNA11931FemaleCaucasian78 YearsNot reported
    SAMN00001593B-LymphocyteNA18526FemaleNot reported
    SAMN00001589B-LymphocyteNA18519MaleNot reported
    SAMN00801684B-LymphocyteNA12751FemaleCaucasianNot reported
    SAMN00001585B-LymphocyteNA18510MaleNot reported
    SAMN00138191B-LymphocyteNA12812MaleCaucasianNot reported
    SAMN00001602B-LymphocyteNA18558MaleNot reported
    SAMN00001569B-LymphocyteNA12828FemaleCaucasianNot reported
    SAMN00801241B-LymphocyteNA12156FemaleCaucasian81 YearsNot reported
    SAMN00801237B-LymphocyteNA12154MaleCaucasian92 YearsNot reported
    SAMN00001610B-LymphocyteNA18572MaleNot reported
    SAMN00801680B-LymphocyteNA12749FemaleCaucasianNot reported
    SAMN00801880B-LymphocyteNA12874MaleCaucasianNot reported
    SAMN00800835B-LymphocyteNA11831MaleCaucasian73 YearsNot reported
    SAMN00001599B-LymphocyteNA18550FemaleNot reported
    SAMN00797406B-LymphocyteNA07347MaleCaucasian86 YearsNot reported
    SAMN00001583B-LymphocyteNA18505FemaleNot reported
    SAMN00801051B-LymphocyteNA12004FemaleCaucasian92 YearsNot reported
    SAMN00001591B-LymphocyteNA18522MaleNot reported
    SAMN00801031B-LymphocyteNA11994MaleCaucasian80 YearsNot reported
    SAMN00801317B-LymphocyteNA12249FemaleCaucasian77 YearsNot reported
    SAMN00001515B-LymphocyteNA06994MaleCaucasian68 YearsNot reported
    SAMN00801708B-LymphocyteNA12763FemaleCaucasianNot reported
    SAMN00001594B-LymphocyteNA18532FemaleNot reported
    SAMN00001564B-LymphocyteNA12776FemaleCaucasianNot reported
    SAMN00800945B-LymphocyteNA11918FemaleCaucasian64 YearsNot reported
    SAMN00797025B-LymphocyteNA06986MaleCaucasian74 YearsNot reported
    SAMN00001606B-LymphocyteNA18564FemaleNot reported
    SAMN00797419B-LymphocyteNA07357MaleCaucasian69 YearsNot reported
    SAMN00001592B-LymphocyteNA18523FemaleNot reported
    SAMN00001605B-LymphocyteNA18563MaleNot reported
    SAMN00001595B-LymphocyteNA18537FemaleNot reported
    SAMN00801103B-LymphocyteNA12045MaleCaucasian74 YearsNot reported
    SAMN00800947B-LymphocyteNA11919MaleCaucasian67 YearsNot reported
    SAMN00001611B-LymphocyteNA18573FemaleNot reported
    SAMN00001556B-LymphocyteNA12717FemaleCaucasianNot reported
    SAMN00001604B-LymphocyteNA18562MaleNot reported
    SAMN00001560B-LymphocyteNA12760MaleCaucasianNot reported
    SAMN00001588B-LymphocyteNA18517FemaleNot reported
    SAMN00001546B-LymphocyteNA12144MaleCaucasian71 YearsNot reported
    SAMN00800837B-LymphocyteNA11832FemaleCaucasian58 YearsNot reported
    SAMN00797126B-LymphocyteNA07037FemaleCaucasian65 YearsNot reported
    SAMN00001590B-LymphocyteNA18520FemaleNot reported
    SAMN00801888B-LymphocyteNA12878FemaleCaucasianNot reported
    SAMN00797023B-LymphocyteNA06985FemaleCaucasian69 YearsNot reported
    SAMN00001544B-LymphocyteNA12044FemaleCaucasian70 YearsNot reported
    SAMN00001582B-LymphocyteNA18504MaleNot reported
    SAMN00001548B-LymphocyteNA12155MaleCaucasian86 YearsNot reported
    SAMN00001608B-LymphocyteNA18570FemaleNot reported
    SAMN00001609B-LymphocyteNA18571FemaleNot reported
    SAMN00800949B-LymphocyteNA11920FemaleCaucasian66 YearsNot reported
    SAMN00001578B-LymphocyteNA18498MaleNot reported
    SAMN00801027B-LymphocyteNA11992MaleCaucasian86 YearsNot reported
    SAMN00001552B-LymphocyteNA12287FemaleCaucasian69 YearsNot reported
    SAMN00800258B-LymphocyteNA10847FemaleCaucasian38 YearsNot reported
    SAMN00001525B-LymphocyteNA11830FemaleCaucasian63 YearsNot reported
    SAMN00801914B-LymphocyteNA12892FemaleCaucasianNot reported
    SAMN00001568B-LymphocyteNA12815FemaleCaucasianNot reported
    SAMN00001597B-LymphocyteNA18545FemaleNot reported
    SAMN00800831B-LymphocyteNA11829MaleCaucasian72 YearsNot reported
    SAMN00801049B-LymphocyteNA12003MaleCaucasian97 YearsNot reported
    SAMN00001579B-LymphocyteNA18499FemaleNot reported
    SAMN00001603B-LymphocyteNA18561MaleNot reported
    SAMN00001596B-LymphocyteNA18542FemaleNot reported
    SAMN00797154B-LymphocyteNA07051MaleCaucasian67 YearsNot reported
    SAMN00001586B-LymphocyteNA18511FemaleNot reported
    SAMN00001587B-LymphocyteNA18516MaleNot reported
    SAMN00797054B-LymphocyteNA07000FemaleCaucasian66 YearsNot reported
    SAMN00001598B-LymphocyteNA18547FemaleNot reported
    SAMN00801099B-LymphocyteNA12043MaleCaucasian74 YearsNot reported
    SAMN00001581B-LymphocyteNA18502FemaleNot reported
    SAMN00801646B-LymphocyteNA12716MaleCaucasianNot reported
    SAMN00801055B-LymphocyteNA12006FemaleCaucasian75 YearsNot reported
    SAMN00801878B-LymphocyteNA12873FemaleCaucasianNot reported
    SAMN00004417B-LymphocyteNA18507MaleNot reported
    SAMN00800266B-LymphocyteNA10851MaleCaucasian52 YearsNot reported
    SAMN00801053B-LymphocyteNA12005MaleCaucasian77 YearsNot reported
    SAMN00001600B-LymphocyteNA18552FemaleNot reported
    SAMN00801770B-LymphocyteNA12813FemaleCaucasianNot reported
    SAMN00001529B-LymphocyteNA11881MaleCaucasian62 YearsNot reported
    SAMN00801912B-LymphocyteNA12891MaleCaucasianNot reported
    SAMN00801029B-LymphocyteNA11993FemaleCaucasian80 YearsNot reported
    SAMN00801509B-LymphocyteNA12414FemaleCaucasianNot reported
    SAMN00001601B-LymphocyteNA18555FemaleNot reported
    SAMN00801772B-LymphocyteNA12814MaleCaucasianNot reported
    SAMN00001538B-LymphocyteNA11995FemaleCaucasian84 YearsNot reported
    SAMN00001550B-LymphocyteNA12234FemaleCaucasian74 YearsNot reported
    SAMN00001584B-LymphocyteNA18508FemaleNot reported
    SAMN00797404B-LymphocyteNA07346FemaleCaucasian85 YearsNot reported
    SAMN00800852B-LymphocyteNA11840FemaleCaucasian67 YearsNot reported
    SAMN00801682B-LymphocyteNA12750MaleCaucasianNot reported
    SAMN00001580B-LymphocyteNA18501MaleNot reported
    SAMN00801876B-LymphocyteNA12872MaleCaucasianNot reported
    SAMN00001607B-LymphocyteNA18566FemaleNot reported
    SAMN00001530B-LymphocyteNA11894FemaleCaucasian69 YearsNot reported
    SAMN00001554B-LymphocyteNA12489FemaleCaucasianNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsSiteNumber of Variant Calls
    1DiscoverySequencingRead depthIlluminaYale University30,713
    2DiscoverySequencingde novo sequence assembly454Oxford University3,482
    3DiscoverySequencingSplit read mapping454Boston College1,688
    4DiscoverySequencingde novo sequence assemblyIlluminaUniversity of Washington657
    5DiscoverySequencingRead depthIlluminaUniversity of Washington3,478
    6DiscoverySequencingSplit read mappingIlluminaWellcome Trust Sanger Institute10,682
    7DiscoverySequencingPaired-end mappingSOLiDApplied Biosystems1,770
    8DiscoverySequencingPaired-end mappingIlluminaWashington University in St. Louis20,017
    9DiscoverySequencingPaired-end mappingIlluminaUniversity of Washington21,056
    10DiscoverySequencingde novo sequence assemblyIlluminaBeijing Genomics Institute1,041
    11DiscoverySequencingSplit read mapping454Yale University34,055
    12DiscoverySequencingRead depthIlluminaCold Spring Harbor Laboratory16,346
    13DiscoverySequencingPaired-end mappingIlluminaBoston College21,615
    14DiscoverySequencingPaired-end mapping454Yale University1,062
    15DiscoverySequencingPaired-end mappingIlluminaWellcome Trust Sanger Institute9,632
    21DiscoverySequencingSplit read mapping454Yale University10,697
    22DiscoverySequencingRead depthIlluminaAlbert Einstein College of Medicine87,720
    23DiscoverySequencingPaired-end mappingIlluminaBroad Institute288,526
    24DiscoverySequencingPaired-end mappingIlluminaWashington University in St. Louis138,122
    25DiscoverySequencingSplit read mappingIlluminaLeiden University3,870
    26DiscoverySequencingSplit read mappingIlluminaLeiden University122,808
    27DiscoverySequencingPaired-end mappingIlluminaBaylor College of Medicine72,846
    28DiscoverySequencingSplit read mapping454Baylor College of Medicine7,992
    29DiscoverySequencingPaired-end mappingIlluminaWellcome Trust Sanger Institute216,282
    30DiscoverySequencingPaired-end mappingSOLiDYale University8,317
    31DiscoverySequencingRead depthIlluminaYale University332,318
    32DiscoverySequencingRead depthIlluminaCold Spring Harbor Laboratory435,607
    33DiscoverySequencingPaired-end mappingIlluminaBaylor College of Medicine156,006
    129DiscoverySequencingPaired-end mappingIllumina20,548
    130DiscoverySequencingSplit read mappingRoche 4545,930
    131DiscoverySequencingSplit read and paired-end mappingIllumina, Roche 45459,370
    133DiscoverySequencingPaired-end mappingIllumina2,164
    134DiscoverySequencingSplit read mappingRoche 454610
    135DiscoverySequencingSplit read and paired-end mappingIllumina, Roche 4543,230
    137DiscoverySequencingPaired-end mappingIllumina6,764
    139DiscoverySequencingPaired-end mappingIllumina767
    141DiscoverySequencingde novo sequence assemblyIllumina, Roche 45441
    142DiscoverySequencingde novo sequence assemblyIllumina, Roche 4544
    143DiscoverySequencingde novo sequence assemblyIllumina, Roche 45423
    144DiscoverySequencingde novo sequence assemblyIllumina, Roche 45416
    145DiscoverySequencingde novo sequence assemblyIllumina, Roche 4544
    146DiscoverySequencingde novo sequence assemblyIllumina, Roche 4546
    147DiscoverySequencingPaired-end mappingABI SOLiD41
    148DiscoverySequencingOtherIllumina29
    149DiscoverySequencingde novo sequence assemblyIllumina, Roche 4542
    150DiscoverySequencingde novo sequence assemblyIllumina54
    151DiscoverySequencingde novo sequence assemblyABI SOLiD, Illumina3
    16ValidationPCROtherNot reportedLSU665
    17ValidationPCROtherNot reportedWellcome Trust Sanger Institute2,548
    18ValidationOligo aCGHProbe signal intensityCustom Nimblegen and Affymetix arrays24,231
    19ValidationSequencingde novo sequence assemblyNot reported52,820
    20ValidationSequencingPaired-end mapping454 GS Titanium7,920
    34ValidationPCROtherNot reportedLSU6,262
    35ValidationPCROtherNot reportedWellcome Trust Sanger Institute14,544
    36ValidationDigital arrayOtherAffymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays345,348
    37ValidationSequencingde novo sequence assemblyNot reported661,425
    38ValidationDigital arrayOtherAffymetrix 6, Illumina 1M, and custom Nimblegen aCGH arraysCold Spring Harbor Laboratory383,403

    Validations

    Experiment IDMethodAnalysisPlatformNumber of Variant Calls Validated
    16PCROtherNot reported665
    17PCROtherNot reported2,548
    18Oligo aCGHProbe signal intensityCustom Nimblegen and Affymetix arrays24,231
    19Sequencingde novo sequence assemblyNot reported52,820
    20SequencingPaired-end mapping454 GS Titanium7,920
    34PCROtherNot reported6,262
    35PCROtherNot reported14,544
    36Digital arrayOtherAffymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays345,348
    37Sequencingde novo sequence assemblyNot reported661,425
    38Digital arrayOtherAffymetrix 6, Illumina 1M, and custom Nimblegen aCGH arrays383,403
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