estd233 (Luo et al. 2017b)

Organism:
Human
Study Type:
Somatic
Submitter:
nana luo
Description:
hepG2 cell line WGS

Detailed Information: Download 1026 Variant Regions, Download 1026 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr12020RemappedNC_000001.11
NC_000002.12Chr21818RemappedNC_000002.12
NC_000003.12Chr33636RemappedNC_000003.12
NC_000004.12Chr41111RemappedNC_000004.12
NC_000005.10Chr52626RemappedNC_000005.10
NC_000006.12Chr64949RemappedNC_000006.12
NC_000007.14Chr79191RemappedNC_000007.14
NC_000008.11Chr84040RemappedNC_000008.11
NC_000009.12Chr92626RemappedNC_000009.12
NC_000010.11Chr101818RemappedNC_000010.11
NC_000011.10Chr114646RemappedNC_000011.10
NC_000012.12Chr128080RemappedNC_000012.12
NC_000013.11Chr131515RemappedNC_000013.11
NC_000014.9Chr141717RemappedNC_000014.9
NC_000015.10Chr153636RemappedNC_000015.10
NC_000016.10Chr162929RemappedNC_000016.10
NC_000017.11Chr17204204RemappedNC_000017.11
NC_000018.10Chr182121RemappedNC_000018.10
NC_000019.10Chr193636RemappedNC_000019.10
NC_000020.11Chr202626RemappedNC_000020.11
NC_000021.9Chr211313RemappedNC_000021.9
NC_000022.11Chr221414RemappedNC_000022.11
NC_000023.11ChrX4646RemappedNC_000023.11
NC_000024.10ChrY9999RemappedNC_000024.10
NW_012132915.1Chr2|NW_012132915.133RemappedNW_012132915.1
NT_187679.1Chr4|NT_187679.111RemappedNT_187679.1
NT_187543.1Chr4|NT_187543.111RemappedNT_187543.1
NT_187650.1Chr4|NT_187650.111RemappedNT_187650.1
NT_187576.1Chr8|NT_187576.144RemappedNT_187576.1
NW_018654716.1Chr8|NW_018654716.111RemappedNW_018654716.1
NW_003315930.1Chr9|NW_003315930.111RemappedNW_003315930.1
NT_187579.1Chr10|NT_187579.111RemappedNT_187579.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NT_187658.1Chr12|NT_187658.122RemappedNT_187658.1
NT_187587.1Chr12|NT_187587.111RemappedNT_187587.1
NW_003571050.1Chr12|NW_003571050.122RemappedNW_003571050.1
NW_011332696.1Chr12|NW_011332696.122RemappedNW_011332696.1
NW_018654722.1Chr14|NW_018654722.144RemappedNW_018654722.1
NT_187383.1Chr16|NT_187383.111RemappedNT_187383.1
NT_187607.1Chr16|NT_187607.111RemappedNT_187607.1
NT_187663.1Chr17|NT_187663.155RemappedNT_187663.1
NW_003871093.1Chr17|NW_003871093.111RemappedNW_003871093.1
NT_187612.1Chr17|NT_187612.111RemappedNT_187612.1
NT_187613.1Chr17|NT_187613.133RemappedNT_187613.1
NT_187614.1Chr17|NT_187614.144RemappedNT_187614.1
NW_016107299.1Chr17|NW_016107299.144RemappedNW_016107299.1
NT_187666.1Chr18|NT_187666.111RemappedNT_187666.1
NW_003315961.1Chr18|NW_003315961.111RemappedNW_003315961.1
NT_187693.1Chr19|NT_187693.111RemappedNT_187693.1
NW_003571061.2Chr19|NW_003571061.211RemappedNW_003571061.2
NW_003571057.2Chr19|NW_003571057.211RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.211RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.211RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.111RemappedNW_003571060.1
NW_003571056.2Chr19|NW_003571056.211RemappedNW_003571056.2
NW_003571055.2Chr19|NW_003571055.211RemappedNW_003571055.2
NT_187619.1Chr19|NT_187619.111RemappedNT_187619.1
NW_003571054.1Chr19|NW_003571054.111RemappedNW_003571054.1
NT_187623.1Chr20|NT_187623.111RemappedNT_187623.1
NT_187632.1Chr22|NT_187632.111RemappedNT_187632.1
NT_187633.1Chr22|NT_187633.111RemappedNT_187633.1
NT_187667.1ChrX|NT_187667.111RemappedNT_187667.1
NT_187634.1ChrX|NT_187634.111RemappedNT_187634.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr12121SubmittedNC_000001.10
NC_000002.11Chr21818SubmittedNC_000002.11
NC_000003.11Chr33636SubmittedNC_000003.11
NC_000004.11Chr41111SubmittedNC_000004.11
NC_000005.9Chr52626SubmittedNC_000005.9
NC_000006.11Chr64949SubmittedNC_000006.11
NC_000007.13Chr79393SubmittedNC_000007.13
NC_000008.10Chr84444SubmittedNC_000008.10
NC_000009.11Chr92626SubmittedNC_000009.11
NC_000010.10Chr101818SubmittedNC_000010.10
NC_000011.9Chr114646SubmittedNC_000011.9
NC_000012.11Chr128080SubmittedNC_000012.11
NC_000013.10Chr131515SubmittedNC_000013.10
NC_000014.8Chr141717SubmittedNC_000014.8
NC_000015.9Chr153636SubmittedNC_000015.9
NC_000016.9Chr162929SubmittedNC_000016.9
NC_000017.10Chr17205205SubmittedNC_000017.10
NC_000018.9Chr182121SubmittedNC_000018.9
NC_000019.9Chr193636SubmittedNC_000019.9
NC_000020.10Chr202626SubmittedNC_000020.10
NC_000021.8Chr211313SubmittedNC_000021.8
NC_000022.10Chr221515SubmittedNC_000022.10
NC_000023.10ChrX4646SubmittedNC_000023.10
NC_000024.9ChrY9999SubmittedNC_000024.9

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.10Chr12113611021136110
NC_000002.11Chr21813200318132003
NC_000003.11Chr33634200036342000
NC_000004.11Chr411730011173001
NC_000005.9Chr52625100026251000
NC_000006.11Chr64942700049427000
NC_000007.13Chr79387321093873210
NC_000008.10Chr84441110144411101
NC_000009.11Chr92623010226230102
NC_000010.10Chr101815110118151101
NC_000011.9Chr114645000146450001
NC_000012.11Chr128070500580705005
NC_000013.10Chr131515000015150000
NC_000014.8Chr141710210417102104
NC_000015.9Chr153632220036322200
NC_000016.9Chr162928000129280001
NC_000017.10Chr17205169136017205169136017
NC_000018.9Chr182120000121200001
NC_000019.9Chr193634000236340002
NC_000020.10Chr202621310126213101
NC_000021.8Chr211313000013130000
NC_000022.10Chr221515000015150000
NC_000023.10ChrX463112201463112201
NC_000024.9ChrY9995400099954000

Samplesets

Number of Samplesets: 1

Name:
hepG2
Description:
hepG2
Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
DNA
Sex:
Male
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID SexEthnicitySubject Phenotype
    hepG21MalehumanDNA

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
    1DiscoverySequencingRead depth and paired-end mappingxten1,026

    Validations

    No validation data were submitted for this study.

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