dbVar FTP File Manifest

Description:

dbVar FTP files of structural variation data organized by assemblies and studies.

Summary:

Report date: Tuesday, September 10, 2019
Number of assemblies: 5
Number of studies: 175
Number of Variant regions: 5,967,857
Number of Variant calls: 35,978,812
FTP Directory: FTP Top-level directory
Release notes: dbVar Release notes
README: FTP Directory and file README
ARCHIVE (including discontinued non-human studies) FTP archive
Non-Redundant Structural Variants GitHub, FTP

dbVar Non-Redundant Structural Variants:

Type and FTP Directory GRCh37 GRCh38 Last modified File Types
deletions 2,551,338 2,538,583 Sep 8, 2019 bed, bedpe, tsv
duplications 412,785 402,978 Sep 8, 2019 bed, bedpe, tsv
insertions 1,322,847 1,324,504 Sep 8, 2019 bed, bedpe, tsv

dbVar data by Assemblies:

Assembly FTP Directory Number of Files Total bytes Last modified File Types
GRCh37 ftp 20 1,323,492,473 Sep 8, 2019 gvf, vcf
GRCh38 ftp 22 1,347,860,983 Sep 8, 2019 gvf, vcf
NCBI34 ftp 10 818,181 Sep 8, 2019 gvf, vcf
NCBI35 ftp 10 61,172,122 Sep 8, 2019 gvf, vcf
NCBI36 ftp 20 385,399,294 Sep 8, 2019 gvf, vcf

dbVar data by Studies:

Study Number of Files Total bytes Last modified File Types
1000_Genomes_Consortium_Phase_1 (estd199) 60 376,808,446 Jun 12, 2019 gvf, tsv, vcf, xml
1000_Genomes_Consortium_Phase_3 (estd214) 175 685,883,564 Apr 13, 2019 gvf, obsolete, tsv, vcf, xml
1000_Genomes_Consortium_Phase_3_Integrated_SV (estd219) 212 871,088,731 Apr 14, 2019 gvf, tsv, vcf, xml
1000_Genomes_Consortium_Pilot_Project (estd59) 107 497,503,522 Sep 21, 2018 gvf, obsolete, tsv, vcf, xml
Adewoye_et_al_2018 (nstd155) 24 260,004 May 12, 2019 gvf, tsv, xml
Ahn_et_al_2009 (estd19) 50 4,025,648 Jun 12, 2019 gvf, tsv, vcf, xml
Alkan_et_al_2009 (nstd31) 50 295,827 Mar 9, 2019 gvf, tsv, vcf, xml
Alsmadi_et_al_2014 (nstd106) 36 18,311,111 Sep 16, 2018 gvf, tsv, vcf, xml
Altshuler_et_al_2010 (estd195) 50 65,562,063 Jun 12, 2019 gvf, tsv, vcf, xml
Ansari_et_al_2016 (estd228) 50 27,768 Jan 23, 2019 gvf, tsv, vcf, xml
Arlt_et_al_2011 (nstd50) 51 2,076,289 Jun 3, 2019 gvf, obsolete, tsv, vcf, xml
Audano_et_al_2019 (nstd162) 36 121,670,682 Jan 29, 2019 gvf, tsv, vcf, xml
Banerjee_et_al_2011 (estd176) 50 949,330 Jun 12, 2019 gvf, tsv, vcf, xml
Bentley_et_al_2008 (estd194) 50 325,313,371 Jun 12, 2019 gvf, tsv, vcf, xml
Besenbacher_et_al_2015 (estd217) 36 14,901,695 Sep 24, 2018 gvf, tsv, vcf, xml
Bhaskaran_et_al_2019 (nstd165) 36 43,565 Jun 12, 2019 gvf, tsv, vcf, xml
Binder_et_al_2016 (nstd124) 36 15,742 Oct 17, 2018 gvf, tsv, vcf, xml
Blake_et_al_2014 (estd210) 36 17,289 Sep 22, 2018 gvf, tsv, vcf, xml
Blanco-Kelly_et_al_2017 (estd232) 36 19,811 Jan 23, 2019 gvf, tsv, vcf, xml
Boone_et_al_2013 (nstd80) 50 2,112,117 Sep 15, 2018 gvf, tsv, vcf, xml
Campbell_et_al_2011 (nstd46) 51 37,830,621 Sep 15, 2018 gvf, obsolete, tsv, vcf, xml
Campbell_et_al_2014 (estd211) 36 71,893 Sep 22, 2018 gvf, tsv, vcf, xml
Campbell_et_al_2014b (nstd98) 36 23,809 Sep 16, 2018 gvf, tsv, vcf, xml
Chaisson_et_al_2019 (nstd152) 37 112,111,886 Feb 5, 2019 gvf, obsolete, tsv, vcf, xml
Chia_et_al_2013 (estd198) 50 204,610 Jun 12, 2019 gvf, tsv, vcf, xml
Cleal_et_al_2019 (nstd158) 36 1,318,395 Jul 26, 2019 gvf, tsv, vcf, xml
ClinGen_Curated_Dosage_Sensitivity_Map (nstd45) 51 651,836 Sep 4, 2019 gvf, obsolete, tsv, vcf, xml
ClinGen_Kaminsky_et_al_2011 (nstd101) 51 3,348,234 Jan 23, 2019 gvf, obsolete, tsv, vcf, xml
ClinGen_Laboratory-Submitted (nstd37) 51 30,421,701 May 13, 2019 gvf, obsolete, tsv, vcf, xml
ClinGen_Prenatal (nstd75) 50 1,284,788 Jan 23, 2019 gvf, tsv, vcf, xml
Clinical_Structural_Variants (nstd102) 93 72,604,601 Aug 29, 2019 gvf, obsolete, tsv, vcf, xml
Coe_et_al_2014 (nstd100) 50 83,570,148 Sep 16, 2018 gvf, tsv, vcf, xml
Conrad_et_al_2005 (nstd17) 50 854,969 Dec 11, 2018 gvf, tsv, vcf, xml
Conrad_et_al_2009 (estd20) 50 28,962,514 Sep 20, 2018 gvf, tsv, vcf, xml
Cooper_et_al_2008 (nstd14) 50 310,030 Sep 14, 2018 gvf, tsv, vcf, xml
Cooper_et_al_2011 (nstd54) 50 81,630,903 Sep 15, 2018 gvf, tsv, vcf, xml
COSMIC (estd192) 36 51,641,719 Dec 11, 2018 gvf, tsv, vcf, xml
dbSNP_curated_variants (nstd90) 26 3,910,532 Oct 3, 2018 gvf, novel, tsv, vcf, xml
de_Boer_et_al_2014 (nstd89) 36 16,744 Jan 23, 2019 gvf, tsv, vcf, xml
de_Ligt_et_al_2013 (nstd84) 36 5,570,925 Sep 15, 2018 gvf, tsv, vcf, xml
de_Smith_et_al_2007 (estd24) 50 6,151,593 Sep 20, 2018 gvf, tsv, vcf, xml
DGV_Gold_Standard (nstd174) 36 142,699,135 Jul 25, 2019 gvf, tsv, vcf, xml
Dittwald_et_al_2013 (nstd79) 43 812,309 Oct 22, 2018 gvf, tsv, vcf, xml
Dogan_et_al_2014 (nstd73) 36 3,956,382 May 13, 2019 gvf, tsv, vcf, xml
Dumanski_et_al_2014 (nstd104) 36 51,427 Sep 16, 2018 gvf, tsv, vcf, xml
Dumanski_et_al_2016 (nstd127) 50 63,279 Sep 17, 2018 gvf, tsv, vcf, xml
Duyzend_et_al_2015 (nstd122) 74 241,818,357 Oct 22, 2018 gvf, tsv, vcf, xml
Exome_Aggregation_Consortium_CNVs (nstd151) 36 36,801,981 Sep 20, 2018 gvf, tsv, vcf, xml
Fakhro_et_al_2015 (estd229) 36 40,568,251 Sep 24, 2018 gvf, tsv, vcf, xml
Fan_et_al_2017 (nstd140) 36 14,906,034 Mar 15, 2019 gvf, tsv, vcf, xml
Feuk_et_al_2005 (estd193) 50 27,231 Jun 12, 2019 gvf, tsv, vcf, xml
Forni_et_al_2015 (nstd116) 36 274,878 Sep 17, 2018 gvf, tsv, vcf, xml
Forsberg_et_al_2012 (nstd58) 50 27,084 Sep 15, 2018 gvf, tsv, vcf, xml
Forsberg_et_al_2014 (nstd92) 36 86,640 Sep 16, 2018 gvf, tsv, vcf, xml
Franke_et_al_2015 (estd222) 24 2,865,741 Sep 24, 2018 gvf, tsv, xml
Frenkel_et_al_2019 (nstd157) 36 1,858,887 May 22, 2019 gvf, tsv, vcf, xml
Fu_et_al_2018 (nstd156) 50 5,950,098 Oct 3, 2018 gvf, tsv, vcf, xml
Fujimoto_et_al_2019 (nstd171) 37 1,949,407 Aug 27, 2019 gvf, obsolete, tsv, vcf, xml
Gambin_et_al_2017 (nstd149) 36 34,988 Dec 11, 2018 gvf, tsv, vcf, xml
Gardner_et_al_2017 (nstd144) 36 16,600,189 Apr 15, 2019 gvf, tsv, vcf, xml
Genome_in_a_Bottle (nstd175) 36 11,819,168 Aug 27, 2019 gvf, tsv, vcf, xml
Giglio_et_al_2002 (estd50) 50 19,306 Sep 20, 2018 gvf, tsv, vcf, xml
gnomAD_Structural_Variants (nstd166) 36 175,437,328 Sep 10, 2019 gvf, tsv, vcf, xml
GoNL (estd215) 36 13,424,623 Sep 24, 2018 gvf, tsv, vcf, xml
Guo_et_al_2016 (nstd129) 36 14,713 Sep 19, 2018 gvf, tsv, vcf, xml
Gupta_et_al_2019 (nstd163) 36 19,417 Jan 16, 2019 gvf, tsv, vcf, xml
Gusev_et_al_2008 (estd49) 50 219,184 Sep 20, 2018 gvf, tsv, vcf, xml
Helbig_et_al_2013 (estd208) 50 110,695 Aug 19, 2019 gvf, tsv, vcf, xml
Helman_et_al_2014 (nstd94) 64 23,066,623 Dec 11, 2018 gvf, tsv, vcf, xml
Hinds_et_al_2005 (nstd34) 50 100,908 Sep 14, 2018 gvf, tsv, vcf, xml
Huddleston_et_al_2016 (nstd137) 36 36,608,715 Mar 15, 2019 gvf, tsv, vcf, xml
Iafrate_et_al_2004 (nstd41) 37 219,561 Aug 27, 2019 gvf, obsolete, tsv, vcf, xml
Itsara_et_al_2009 (nstd27) 50 7,236,244 Sep 14, 2018 gvf, tsv, vcf, xml
Jakobsson_et_al_2008 (nstd30) 50 1,800,811 Dec 9, 2018 gvf, tsv, vcf, xml
John_et_al_2014 (nstd107) 36 4,283,034 Sep 16, 2018 gvf, tsv, vcf, xml
Ju_et_al_2010 (nstd65) 50 1,000,783 Sep 15, 2018 gvf, tsv, vcf, xml
Karolak_et_al_2019 (nstd164) 36 21,226 Feb 1, 2019 gvf, tsv, vcf, xml
Kasak_et_al_2015 (estd216) 36 394,379 Jan 23, 2019 gvf, tsv, vcf, xml
Kidd_et_al_2008 (nstd2) 50 9,224,152 Oct 22, 2018 gvf, tsv, vcf, xml
Kidd_et_al_2010 (nstd35) 69 7,741,761 Aug 27, 2019 gvf, novel, obsolete, tsv, vcf, xml
Kidd_et_al_2010b (nstd47) 51 858,688 Aug 29, 2019 gvf, obsolete, tsv, vcf, xml
Kim_et_al_2009 (nstd43) 50 1,056,797 Sep 15, 2018 gvf, tsv, vcf, xml
Korbel_et_al_2007 (nstd16) 51 985,048 Oct 22, 2018 gvf, obsolete, tsv, vcf, xml
Kucukkilic_et_al_2018 (nstd159) 36 54,910 Oct 22, 2018 gvf, tsv, vcf, xml
Kurtas_et_al_2018 (estd236) 36 23,084 Feb 6, 2019 gvf, tsv, vcf, xml
Leppa_et_al_2016 (nstd130) 50 45,233,843 Sep 19, 2018 gvf, tsv, vcf, xml
Levy-Sakin_et_al_2019 (nstd168) 37 9,460,226 Apr 5, 2019 gvf, obsolete, tsv, vcf, xml
Levy_et_al_2007 (estd22) 68 489,352,921 Oct 23, 2018 gvf, tsv, vcf, xml
Lindstrand_et_al_2014 (nstd93) 36 13,803 Jan 23, 2019 gvf, tsv, vcf, xml
Locke_et_al_2006 (nstd29) 51 1,655,346 Sep 14, 2018 gvf, obsolete, tsv, vcf, xml
Lopez-Herrera_et_al_2012 (nstd59) 50 17,829 Jan 23, 2019 gvf, tsv, vcf, xml
Lou_et_al_2014 (nstd97) 36 2,819,561 Sep 16, 2018 gvf, tsv, vcf, xml
Lou_et_al_2015 (nstd111) 36 2,325,020 Sep 16, 2018 gvf, tsv, vcf, xml
Low_et_al_2016 (nstd81) 50 22,045 Sep 15, 2018 gvf, tsv, vcf, xml
LSDB_submitted_variants (nstd103) 36 92,479 Aug 21, 2019 gvf, tsv, vcf, xml
Lu_et_al_2017 (nstd145) 36 7,307,694 Sep 19, 2018 gvf, tsv, vcf, xml
Luo_et_al_2017 (nstd139) 36 14,541 Sep 19, 2018 gvf, tsv, vcf, xml
Luo_et_al_2017b (estd233) 36 400,475 Sep 24, 2018 gvf, tsv, vcf, xml
Magnusson_et_al_2016 (estd225) 37 627,049 Sep 24, 2018 gvf, obsolete, tsv, vcf, xml
Mallick_et_al_2016 (nstd128) 147 780,486,442 Sep 19, 2018 gvf, obsolete, tsv, xml
Marshall_et_al_2008 (nstd12) 51 1,905,840 Sep 14, 2018 gvf, obsolete, tsv, vcf, xml
McCarroll_et_al_2006 (nstd20) 51 1,023,770 Sep 14, 2018 gvf, obsolete, tsv, vcf, xml
McCarroll_et_al_2008 (nstd22) 50 7,358,407 Sep 14, 2018 gvf, tsv, vcf, xml
McKernan_et_al_2009 (estd197) 50 146,993,303 Jun 12, 2019 gvf, tsv, vcf, xml
Mills_et_al_2006 (nstd6) 50 289,285,117 Sep 14, 2018 gvf, tsv, vcf, xml
Mitsui_et_al_2010 (nstd36) 50 234,572 Jan 23, 2019 gvf, tsv, vcf, xml
Mokhtar_et_al_2014 (estd213) 50 508,670 Sep 22, 2018 gvf, tsv, vcf, xml
Morak_et_al_2012 (nstd72) 36 14,216 Mar 9, 2019 gvf, tsv, vcf, xml
Morak_et_al_2013 (nstd83) 36 25,933 Mar 9, 2019 gvf, tsv, vcf, xml
Möller_et_al_2017 (nstd154) 36 17,851 Sep 20, 2018 gvf, tsv, vcf, xml
Nagirnaja_et_al_2014 (estd206) 50 526,984 Sep 22, 2018 gvf, tsv, vcf, xml
Nazaryan-Petersen_et_al_2019 (nstd161) 30 39,679 Jul 23, 2019 gvf, tsv, vcf, xml
Onozawa_et_al_2015 (nstd105) 36 143,109 Dec 11, 2018 gvf, tsv, vcf, xml
Palta_et_al_2015 (estd221) 50 1,384,183 Sep 24, 2018 gvf, tsv, vcf, xml
Pang_et_al_2010 (estd180) 50 16,462,291 Jun 12, 2019 gvf, tsv, vcf, xml
Pang_et_al_2014b (estd209) 36 152,928,396 Oct 23, 2018 gvf, tsv, vcf, xml
Park_et_al_2010 (nstd67) 50 9,956,131 Sep 15, 2018 gvf, tsv, vcf, xml
Perry_et_al_2008 (nstd4) 50 10,063,664 Nov 30, 2018 gvf, tsv, vcf, xml
Perry_et_al_2008b (nstd8) 50 1,334,128 Sep 14, 2018 gvf, tsv, vcf, xml
Pettigrew_et_al_2015 (estd220) 36 2,279,780 Dec 17, 2018 gvf, tsv, vcf, xml
Pinto_et_al_2007 (estd55) 51 7,219,544 Sep 20, 2018 gvf, obsolete, tsv, vcf, xml
Pinto_et_al_2011 (estd188) 50 43,413,782 Jun 12, 2019 gvf, tsv, vcf, xml
Polley_et_al_2015 (nstd118) 36 470,366 Sep 17, 2018 gvf, tsv, vcf, xml
Polley_et_al_2016 (nstd77) 36 1,312,866 Oct 22, 2018 gvf, tsv, vcf, xml
Polyak_et_al_2015 (nstd113) 50 9,554,322 Feb 9, 2019 gvf, tsv, vcf, xml
Poultney_et_al_2013 (nstd86) 36 801,062 Oct 22, 2018 gvf, tsv, vcf, xml
Rahbari_et_al_2017 (nstd142) 32 14,061 Sep 19, 2018 gvf, tsv, xml
Rambo-Martin_et_al_2018 (nstd141) 36 100,326 Sep 19, 2018 gvf, tsv, vcf, xml
Redin_et_al_2016 (nstd133) 30 1,097,871 Jan 23, 2019 gvf, tsv, vcf, xml
Redon_et_al_2006 (estd1) 50 12,178,015 Jun 12, 2019 gvf, tsv, vcf, xml
Sallustio_et_al_2014 (nstd91) 50 171,678 Feb 9, 2019 gvf, tsv, vcf, xml
Schrider_et_al_2013 (nstd78) 36 72,228 May 13, 2019 gvf, tsv, vcf, xml
Schuster_et_al_2010 (nstd39) 50 196,898 May 13, 2019 gvf, tsv, vcf, xml
Sebat_et_al_2004 (nstd66) 50 120,609 Sep 15, 2018 gvf, tsv, vcf, xml
Shaikh_et_al_2009 (nstd21) 50 25,564,547 Jan 12, 2019 gvf, tsv, vcf, xml
Shang_et_al_2017 (nstd143) 36 20,846 Sep 19, 2018 gvf, tsv, vcf, xml
Sharp_et_al_2005 (nstd32) 51 511,389 Sep 14, 2018 gvf, obsolete, tsv, vcf, xml
Sharp_et_al_2006 (nstd40) 51 1,991,843 Aug 27, 2019 gvf, obsolete, tsv, vcf, xml
Sharp_et_al_2007 (nstd33) 50 20,304 Jan 23, 2019 gvf, tsv, vcf, xml
Sharp_et_al_2008 (nstd42) 50 50,166 Jan 23, 2019 gvf, tsv, vcf, xml
Simon-Sanchez_et_al_2006 (estd196) 50 307,605 Jun 12, 2019 gvf, tsv, vcf, xml
Simpson_et_al_2015 (estd218) 36 2,693,378 Dec 11, 2018 gvf, tsv, vcf, xml
SKY-CGH (nstd136) 4 1,574 Sep 19, 2018 tsv, xml
Stefansson_et_al_2005 (estd48) 50 17,829 Sep 20, 2018 gvf, tsv, vcf, xml
Sudmant_et_al_2013 (nstd82) 83 210,292,187 Sep 18, 2018 gvf, obsolete, tsv, vcf, xml
Sudmant_et_al_2015 (nstd112) 102 332,657,948 Sep 17, 2018 gvf, tsv, vcf, xml
Suktitipat_et_al_2014 (estd224) 50 8,760,248 Sep 24, 2018 gvf, tsv, vcf, xml
Szafranski_et_al_2018 (nstd153) 36 15,890 Jan 16, 2019 gvf, tsv, vcf, xml
Teague_et_al_2010 (nstd49) 51 3,619,877 Jan 23, 2019 gvf, obsolete, tsv, vcf, xml
Thareja_et_al_2015 (nstd99) 36 4,928,280 Sep 16, 2018 gvf, tsv, vcf, xml
Thevenon_et_al_2012 (estd186) 50 21,019 Jun 12, 2019 gvf, tsv, vcf, xml
Tuttelmann_et_al_2011 (nstd53) 50 2,080,651 Sep 15, 2018 gvf, tsv, vcf, xml
Tuzun_et_al_2005 (nstd1) 50 322,992 Sep 13, 2018 gvf, tsv, vcf, xml
Uddin_et_al_2014 (estd212) 36 10,981,103 Sep 22, 2018 gvf, tsv, vcf, xml
User_submitted_curated_variants (nstd51) 65 295,505 May 13, 2019 gvf, obsolete, tsv, vcf, xml
vanSilfhout_et_al_2013 (nstd85) 50 1,183,170 Dec 11, 2018 gvf, tsv, vcf, xml
Vogler_et_al_2010 (estd203) 51 10,262,575 Sep 22, 2018 gvf, obsolete, tsv, vcf, xml
Walker_et_al_2017 (nstd132) 50 6,413,483 Sep 19, 2018 gvf, tsv, vcf, xml
Walter_et_al_2009 (nstd11) 51 200,518 Jan 23, 2019 gvf, obsolete, tsv, vcf, xml
Wang_et_al_2007 (nstd64) 50 1,491,331 Jan 13, 2019 gvf, tsv, vcf, xml
Wang_et_al_2008 (estd3) 50 1,953,286 Sep 20, 2018 gvf, tsv, vcf, xml
Watkins_et_al_2011 (nstd52) 50 21,403 Jan 23, 2019 gvf, tsv, vcf, xml
Watson_et_al_2013 (nstd76) 36 22,300 Sep 15, 2018 gvf, tsv, vcf, xml
Wenger_et_al_2019 (nstd167) 36 21,604,678 Aug 29, 2019 gvf, tsv, vcf, xml
Wheeler_et_al_2008 (estd21) 50 55,096 Sep 20, 2018 gvf, tsv, vcf, xml
Wildschutte_et_al_2015 (nstd109) 36 1,002,006 Sep 16, 2018 gvf, tsv, vcf, xml
Wills_et_al_2016 (nstd125) 45 36,738 Dec 11, 2018 gvf, obsolete, tsv, vcf, xml
Wong_et_al_2006 (nstd68) 50 4,671,051 Sep 15, 2018 gvf, tsv, vcf, xml
Wong_et_al_2013 (estd201) 36 103,078,774 Sep 22, 2018 gvf, tsv, vcf, xml
Wong_et_al_2016 (estd231) 36 3,159,027 Jun 3, 2019 gvf, tsv, vcf, xml
Xu_et_al_2011 (nstd71) 50 66,685,756 Sep 15, 2018 gvf, tsv, vcf, xml
Young_et_al_2008 (nstd23) 51 53,839 Sep 14, 2018 gvf, obsolete, tsv, vcf, xml
Zhang_et_al_2009 (nstd28) 50 22,775 Jan 23, 2019 gvf, tsv, vcf, xml
Zhu_et_al_2011 (nstd55) 36 26,724 Sep 15, 2018 gvf, tsv, vcf, xml
Zlotina_et_al_2016 (estd226) 50 21,348 Sep 24, 2018 gvf, tsv, vcf, xml

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Last updated: 2019-06-14T16:12:07Z