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NM_001077365.2(POMT1):c.2068G>A (p.Val690Met)

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Interpretation:
Uncertain significance​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
2 (Most recent: Jan 7, 2021)
Last evaluated:
Aug 22, 2020
Accession:
VCV000805235.2
Variation ID:
805235
Description:
single nucleotide variant
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NM_001077365.2(POMT1):c.2068G>A (p.Val690Met)

Allele ID
793304
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
9q34.13
Genomic location
9: 131522996 (GRCh38) GRCh38 UCSC
9: 134398383 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000009.11:g.134398383G>A
NC_000009.12:g.131522996G>A
NM_001077365.2:c.2068G>A MANE Select NP_001070833.1:p.Val690Met missense
... more HGVS
Protein change
V538M, V573M, V595M, V636M, V658M, V660M, V686M, V690M, V712M, V560M, V617M
Other names
-
Canonical SPDI
NC_000009.12:131522995:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
-

Allele frequency
Trans-Omics for Precision Medicine (TOPMed) 0.00002
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00008
Links
dbSNP: rs150209587
Varsome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Uncertain significance 1 criteria provided, single submitter Sep 19, 2018 RCV000992697.1
Uncertain significance 1 criteria provided, single submitter Aug 22, 2020 RCV001346349.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
POMT1 - - GRCh38
GRCh37
561 599

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Uncertain significance
(Sep 19, 2018)
criteria provided, single submitter
Method: clinical testing
not provided
Allele origin: germline
Athena Diagnostics Inc
Accession: SCV001145183.1
Submitted: (Sep 25, 2019)
Evidence details
Uncertain significance
(Aug 22, 2020)
criteria provided, single submitter
Method: clinical testing
Congenital muscular dystrophy-dystroglycanopathy with mental retardation, type B1
Walker-Warburg congenital muscular dystrophy
Limb-girdle muscular dystrophy-dystroglycanopathy, type C1
Allele origin: germline
Invitae
Accession: SCV001540543.1
Submitted: (Jan 07, 2021)
Evidence details
Comment:
This sequence change replaces valine with methionine at codon 712 of the POMT1 protein (p.Val712Met). The valine residue is weakly conserved and there is a … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs150209587...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Jun 14, 2021