NM_000492.4(CFTR):c.4056G>C (p.Gln1352His)
criteria provided, conflicting classifications. Learn more about how ClinVar calculates review status.
Pathogenic (2); Likely pathogenic (2); Uncertain significance (11); Benign (1); Likely benign (3)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NM_000492.4(CFTR):c.4056G>C (p.Gln1352His)
Variation ID: 7237 Accession: VCV000007237.61
- Type and length
-
single nucleotide variant, 1 bp
- Location
-
Cytogenetic: 7q31.2 7: 117664780 (GRCh38) [ NCBI UCSC ] 7: 117304834 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Dec 6, 2016 Aug 22, 2026 Feb 2, 2026 - HGVS
-
... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_000492.4:c.4056G>C MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_000483.3:p.Gln1352His missense NC_000007.14:g.117664780G>C NC_000007.13:g.117304834G>C NG_016465.4:g.203997G>C LRG_663:g.203997G>C LRG_663t1:c.4056G>C LRG_663p1:p.Gln1352His - Protein change
- Q1352H
- Other names
- -
- Canonical SPDI
- NC_000007.14:117664779:G:C
-
Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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0.00419 (C)
-
Allele frequency
Help
The frequency of the allele represented by this VCV record.
-
1000 Genomes Project 0.00419
1000 Genomes Project 30x 0.00359
Trans-Omics for Precision Medicine (TOPMed) 0.00061
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| CFTR | Gene associated with autosomal recessive phenotype | Not yet evaluated |
GRCh38 GRCh37 |
3952 | 6466 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Conflicting classifications of pathogenicity (8) |
criteria provided, conflicting classifications
|
Feb 2, 2026 | RCV000007659.42 | |
| Uncertain significance (5) |
criteria provided, multiple submitters, no conflicts
|
Oct 10, 2025 | RCV000586028.33 | |
| Conflicting classifications of pathogenicity (4) |
criteria provided, conflicting classifications
|
Jan 29, 2018 | RCV001009487.22 | |
| Likely benign (1) |
criteria provided, single submitter
|
Jun 26, 2025 | RCV001375489.15 | |
| Conflicting classifications of pathogenicity (3) |
criteria provided, conflicting classifications
|
Aug 27, 2024 | RCV005031417.3 | |
| Likely pathogenic (1) |
criteria provided, single submitter
|
Feb 18, 2025 | RCV006249551.3 | |
| Likely pathogenic (1) |
criteria provided, single submitter
|
Nov 23, 2024 | RCV006700667.1 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
Expand all rows
Collapse all rows
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
|
|---|---|---|---|---|---|
|
Likely benign
(Apr 27, 2017)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
CFTR-Related Disorders |
Illumina Laboratory Services, Illumina
Accession: SCV000466528.3
First in ClinVar: Dec 06, 2016 Last updated: May 31, 2020 |
Comment:
show
This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Uncertain significance
(May 09, 2023)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Mayo Clinic Laboratories, Mayo Clinic
Accession: SCV001713443.3
First in ClinVar: Jun 15, 2021 Last updated: Jan 26, 2024 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 5
|
|
|
Uncertain significance
(Sep 28, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Ambry Genetics
Accession: SCV001183420.7
First in ClinVar: Mar 16, 2020 Last updated: Jan 11, 2026 |
Comment:
show
The p.Q1352H variant (also known as c.4056G>C), located in coding exon 25 of the CFTR gene, results from a G to C substitution at nucleotide position 4056. The glutamine at codon 1352 is replaced by histidine, an amino acid with highly similar properties. The variant has been reported in multiple Asian individuals with CFTR-related findings, including congenital absence of the vas deferens, chronic pancreatitis, and pulmonary disease cohorts; a few individuals were homozygotes and several had additional CFTR variants also detected (Dörk T et al. Hum. Genet., 1997 Sep;100:365-77; Anzai C et al. J. Cyst. Fibros., 2003 Mar;2:14-8; Lee JH et al. Hum. Mol. Genet., 2003 Sep;12:2321-32; Oka H et al. Intern Med, 2010 Jun;49:1251-2; Qiu L et al. Front Med, 2018 Oct;12:550-558; Iso M et al. Hum Genome Var, 2019 Apr;6:17; Yuan P et al. Andrology, 2019 05;7:329-340). In addition, in vitro functional studies showed that this variant results in a 70-80% reduction in the expression of the mature glycosylated CFTR protein and in chloride channel activity (Lee JH et al. Hum. Mol. Genet., 2003 Sep;12:2321-32). This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on available evidence to date, this variant is unlikely to be causative of classic cystic fibrosis; however, its contribution to the development of a CFTR-related disorder is uncertain. Based on the available evidence, the clinical significance of this variant remains unclear. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Feb 02, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000075079.13
First in ClinVar: Jul 03, 2013 Last updated: Feb 23, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Likely pathogenic
(Feb 18, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Congenital bilateral aplasia of vas deferens from CFTR mutation |
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
Accession: SCV007097334.3
First in ClinVar: Nov 08, 2025 Last updated: Aug 04, 2026 |
Comment:
show
This variant is classified as Likely pathogenic. Evidence in support of pathogenic classification: This variant has moderate functional evidence supporting abnormal protein function. Expression of mature glycosylated CFTR protein and whole cell chloride currents were significantly reduced in mutant cells (PMID: 12952861); Missense variant predicted to be damaging by in silico tool(s) or highly conserved with a major amino acid change. Additional information: Variant is predicted to result in a missense amino acid change from glutamine to histidine; This variant is heterozygous; This gene is associated with autosomal recessive disease; Variant is present in gnomAD >=0.01 and <0.03 for a recessive condition (v4: 912 heterozygote(s), 18 homozygote(s)). An alternate nucleotide change resulting in the same amino acid change is also present in gnomAD (v4: 68 heterozygote(s), 1 homozygote(s)); Alternative amino acid change(s) at the same position are present in gnomAD (Highest alelle count: v4: 17 heterozygote(s), 0 homozygote(s)); Previous reports of pathogenicity for this variant are conflicting. However, this variant has been reported in multiple individuals with CF-related disorders (LOVD; ClinVar; PMID: 30811104, 32777524); No comparable missense variants have previous evidence for pathogenicity; Variant is located in the annotated ABC transporter domain (PDB); Loss of function is a known mechanism of disease in this gene and is associated with cystic fibrosis (MIM#219700) and cystic fibrosis-related disorders; This variant has been shown to be maternally inherited by trio analysis. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: no
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: no
|
|
|
Uncertain significance
(May 28, 2019)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Mendelics
Accession: SCV001137498.1
First in ClinVar: Jan 09, 2020 Last updated: Jan 09, 2020 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
Uncertain significance
(Jun 22, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hereditary pancreatitis
Bronchiectasis with or without elevated sweat chloride 1 Cystic fibrosis Congenital bilateral aplasia of vas deferens from CFTR mutation
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
Fulgent Genetics, Fulgent Genetics
Accession: SCV005666438.1
First in ClinVar: Jan 25, 2025 Last updated: Jan 25, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Uncertain significance
(Nov 20, 2017)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Eurofins Ntd Llc (ga)
Accession: SCV000331812.5
First in ClinVar: Dec 06, 2016 Last updated: Apr 13, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 9
Zygosity: 9 Single Heterozygotes
Sex: mixed
|
|
|
Likely benign
(Jun 26, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not specified |
Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV000696997.8
First in ClinVar: Mar 17, 2018 Last updated: Jul 05, 2025 |
Comment:
show
Variant summary: CFTR c.4056G>C (p.Gln1352His) results in a non-conservative amino acid change in the encoded protein sequence. Algorithms developed to predict the effect of missense changes on protein structure and function all suggest that this variant is likely to be disruptive. The variant allele was found at a frequency of 0.0023 in 1754570 control chromosomes, predominantly at a frequency of 0.019 within the East Asian subpopulation in the gnomAD database, including 16 homozygotes. The observed variant frequency within East Asian control individuals in the gnomAD database is approximately 1.47 fold of the estimated maximal expected allele frequency for a pathogenic variant in CFTR causing Non-Classic Cystic Fibrosis phenotype (0.013). Other control population data sources estimated the frequency of this variant to range from 0.019-0.022 across individuals of Chinese, Malay, Indian, and Japanese descent (Chan_2022, jMorp database), including >50 homozygotes. c.4056G>C variant is frequently reported in the simple heterozygous, presumed compound heterozygous, and homozygous states among numerous individuals with clinical features of CF-related conditions ranging from CBAVD and pancreatitis to cystic fibrosis, without strong evidence causality (example, Dork_1997, Keiles_2006, Bienvenu_2005, Xu_2017). However, one study reported the variant in two unaffected siblings who also carried a pathogenic CFTR mutation in trans (p.Y122X), including an apparently fertile male, suggesting the variant may not be fully penetrant or is not pathogenic (Bienvenu_2005). A recent study found the variant in 32/276 Chinese CAVD patients (i.e. with an allele frequency of 5.98%, including 1 homozygote), and in only 1 allele from 50 control individuals (Luo_2021). Several independent publications assert that this variant is possibly associated with these CF-related phenotypes based on elevated risk. However, none of the available evidence found any recorded instances of segregation with disease, nor did any of the case/control cohorts include statistically reliable risk data due to insufficient numbers of tested individuals. At least one publication reports experimental evidence evaluating an impact on protein function in vitro. The most pronounced variant effect results in 10%-30% of normal activity (Lee_2003) and approximately 36% of normal chloride channel conductance relative to wildtype (Bihler_2024). The following publications have been ascertained in the context of this evaluation (PMID: 15463840, 16596947, 38388235, 17539902, 28603918, 9272157, 15121783, 20021716, 29997923, 17003641, 33663443, 31180159, 12952861, 22483971, 32777524, 25492507, 16678503, 20558957, 29520692, 17329263, 33374015, 31682332, 21520337, 28608624, 19812525, 20233062, 36335097). ClinVar contains an entry for this variant (Variation ID: 7237). Based on the evidence outlined above, the variant was classified as likely benign. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Uncertain significance
(Mar 18, 2016)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Soonchunhyang University Bucheon Hospital, Soonchunhyang University Medical Center
Accession: SCV000267254.1
First in ClinVar: May 24, 2017 Last updated: May 24, 2017 |
Observation: 1
Collection method: reference population
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: reference population
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 6
Age: 40-69 years
Ethnicity/Population group: East Asian
Geographic origin: South Korean
|
|
|
Likely benign
(Sep 07, 2021)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Johns Hopkins Genomics, Johns Hopkins University
Accession: SCV001905498.1
First in ClinVar: Sep 24, 2021 Last updated: Sep 24, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Uncertain significance
(May 12, 2021)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Genome Diagnostics Laboratory, The Hospital for Sick Children
Accession: SCV002507388.1
First in ClinVar: May 16, 2022 Last updated: May 16, 2022 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Aug 27, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis
Bronchiectasis with or without elevated sweat chloride 1 Hereditary pancreatitis Congenital bilateral aplasia of vas deferens from CFTR mutation
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
Accession: SCV000603061.5
First in ClinVar: Dec 06, 2016 Last updated: Mar 11, 2025 |
Comment:
show
The CFTR c.4056G>C; p.Gln1352His variant (rs113857788) is reported in the literature in multiple individuals affected with CFTR-related disorders, including congenital bilateral absence of vas deferens (Anzai 2003, Danziger 2004, Ratbi 2007, Steiner 2011, Li 2012) and pancreatitis (Lee 2003, Keiles 2006). In multiple affected individuals, this variant has been found in trans to other pathogenic CFTR variants (Anzai 2003, Steiner 2011, Li 2012). This variant is also observed at a significantly higher frequency in Asian pancreatitis patients compared to unaffected individuals (Lee 2003, Fujiki 2004). This variant is reported in ClinVar (Variation ID: 7237) and is observed in the general population with an overall allele frequency of 0.1% (275/282620 alleles, including three homozygotes) in the Genome Aggregation Database. Computational analyses predict that this variant is deleterious (REVEL: 0.923), and expression of the variant protein in a cell line reveals a significant reduction in mature CFTR protein detected compared to wildtype (Lee 2003). Based on available information, the variant is considered to be mildly pathogenic. References: Anzai C et al. CFTR gene mutations in Japanese individuals with congenital bilateral absence of the vas deferens. J Cyst Fibros. 2003 2(1):14-8. PMID: 15463840. Danziger K et al. Improved detection of cystic fibrosis mutations in infertility patients with DNA sequence analysis. Hum Reprod. 2004 19(3):540-6. PMID: 14998948. Fujiki K et al. Genetic evidence for CFTR dysfunction in Japanese: background for chronic pancreatitis. J Med Genet. 2004 41(5):e55. PMID: 15121783. Keiles S et al. Identification of CFTR, PRSS1, and SPINK1 mutations in 381 patients with pancreatitis. Pancreas. 2006 33(3):221-7. PMID: 17003641. Lee J et al. A haplotype-based molecular analysis of CFTR mutations associated with respiratory and pancreatic diseases. Hum Mol Genet. 2003 12(18):2321-32. PMID: 12952861. Li H et al. Mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) in Chinese patients with congenital bilateral absence of vas deferens. J Cyst Fibros. 2012 11(4):316-23. PMID: 22483971. Ratbi I et al. Detection of cystic fibrosis transmembrane conductance regulator (CFTR) gene rearrangements enriches the mutation spectrum in congenital bilateral absence of the vas deferens and impacts on genetic counselling. Hum Reprod. 2007 22(5):1285-91. PMID: 17329263. Steiner B et al. Common CFTR haplotypes and susceptibility to chronic pancreatitis and congenital bilateral absence of the vas deferens. Hum Mutat. 2011 32(8):912-20. PMID: 21520337. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Jan 29, 2018)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
CFTR-related disorders |
CFTR-France
Accession: SCV001169582.2
First in ClinVar: Mar 16, 2020 Last updated: Apr 13, 2025 |
Observation:
2
Observation 1
Collection method: curation
Allele origin: germline
Affected status: yes
Sex: male
Observation 2
Collection method: curation
Allele origin: germline
Affected status: no
Sex: female
|
|
|
Uncertain significance
(Sep 24, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cystic fibrosis |
Genesolutions, Medical Genetics Institutes, Ho Chi Minh City, Vietnam
Accession: SCV006551337.1
First in ClinVar: Mar 28, 2026 Last updated: Mar 28, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Geographic origin: Vietnam
|
|
|
Uncertain significance
(Oct 10, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
GeneDx
Accession: SCV002538698.3
First in ClinVar: Jun 24, 2022 Last updated: Oct 25, 2025 |
Comment:
show
Although this variant has not been reported in the homozygous or compound heterozygous state in individuals with cystic fibrosis, it has been reported in individuals of Asian ancestry with CFTR-related disorders (PMID: 20021716, 21520337, 27578509, 32777524); Case control studies suggest this variant may be associated with pancreatitis in the Asian population; however, the association was not statistically significant in some studies (PMID: 15121783, 30992994, 25492507, 30420730); Published functional studies demonstrate a damaging effect: reduced chloride channel activity and chloride/bicarbonate exchange activity (PMID: 12952861); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 27578509, 21520337, 16678503, 20981092, 20021716, 16187186, 30420730, 25492507, 17719933, 26089335, 28608624, 30450785, 28687971, 15121783, 31180159, 35119551, 23514810, 33663443, 32777524, 30992994, 38388235, 34931337, 35858753, 36437957, 35753512, 39107787, 40421383, 40065563, 39397452, 35313924, 39402445, 36335097, 12952861) (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Uncertain significance
(Oct 09, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Quest Diagnostics Nichols Institute San Juan Capistrano
Accession: SCV002047115.4
First in ClinVar: Jan 03, 2022 Last updated: Dec 07, 2025 |
Comment:
show
The CFTR c.4056G>C (p.Gln1352His) variant has been reported in the published literature in individuals described as having features of cystic fibrosis (CF) (PMIDs: 21779199 (2011), 26708955 (2016), 28608624 (2017), 31136843 (2019), 36409994 (2022), 39107787 (2024)). However, this variant is likely not associated with classic CF, but it may be associated with CFTR-related diseases such as congenital bilateral absence of the vas deferens (CBAVD) (PMIDs: 28603918 (2017), 30811104 (2019), 32777524 (2021), 34673937 (2021), 35119551 (2022), 39402445 (2024)), bronchiectasis (PMIDs: 12952861 (2003), 29997923 (2018)), and pancreatitis (PMIDs: 16187186 (2005), 32352720 (2020)). In addition, in vitro studies have reported that this variant has a moderate deleterious effect on CFTR protein expression and channel activity (PMID: 12952861 (2003), 38388235 (2024)). The frequency of this variant in the general population (Genome Aggregation Database, http://gnomad.broadinstitute.org) is higher than would generally be expected for pathogenic variants in this gene. Based on the available information, we are unable to determine the clinical significance of this variant. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
Uncertain significance
(-)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Bronchiectasis with or without elevated sweat chloride 1
Hereditary pancreatitis Congenital bilateral aplasia of vas deferens from CFTR mutation Cystic fibrosis
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
Juno Genomics, Hangzhou Juno Genomics, Inc
Accession: SCV007496004.1
First in ClinVar: Mar 01, 2026 Last updated: Mar 01, 2026 |
Comment:
show
Well-established in vitro or in vivo functional studies supportive of a damaging effect on the gene or gene product.;For recessive disorders, detected in trans with a pathogenic variant.;Patient's phenotype or family history is highly specific for a disease with a single genetic etiology. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Likely pathogenic
(Nov 23, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hereditary pancreatitis |
Genetics and Genomic Medicine Centre, NeuroGen Healthcare, NeuroGen Healthcare
Accession: SCV007602737.1
First in ClinVar: Jun 14, 2026 Last updated: Jun 14, 2026 |
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Clinical Features:
swollen pancreatitis (present)
Age: 0-9 years
Sex: female
Ethnicity/Population group: South East Asian
Geographic origin: Bangladesh
Platform type: next-gen sequencing
|
|
|
Pathogenic
(Sep 15, 2003)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
CYSTIC FIBROSIS |
OMIM
Accession: SCV000027860.3
First in ClinVar: Apr 04, 2013 Last updated: Apr 12, 2018 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Comment on evidence:
In a patient with cystic fibrosis (CF; 219700), Lee et al. (2003) identified a G-to-C transversion at nucleotide 4188 in exon 22 of the CFTR … (more)
In a patient with cystic fibrosis (CF; 219700), Lee et al. (2003) identified a G-to-C transversion at nucleotide 4188 in exon 22 of the CFTR gene that resulted in a gln1352-to-his (Q1352H) amino acid change. (less)
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Uncertain significance
(Aug 29, 2024)
N
Not contributing to aggregate classification
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no assertion criteria provided
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CFTR-related condition |
PreventionGenetics, part of Exact Sciences
Accession: SCV004115982.3
First in ClinVar: Nov 20, 2023 Last updated: Oct 08, 2024 |
Comment:
show
The CFTR c.4056G>C variant is predicted to result in the amino acid substitution p.Gln1352His. This variant has been reported in patients with several different phenotypes including asthma, alcoholic chronic pancreatitis, idiopathic chronic pancreatitis, azoospermic males, and bronchiectasis (Cho et al. 2016. PubMed ID: 27578509; Gallati et al. 2009. PubMed ID: 20021716; Kondo et al. 2015. PubMed ID: 26089335; Pall et al. 2007. PubMed ID: 17719933). The c.4056G>C (p.Gln1352His) variant has been found at higher rates in Asian patients with pancreatitis (12.3%) compared to unaffected controls (3.7%) (Fujiki et al. 2004. PubMed ID: 15121783). However, the majority of these studies were conducted in Eastern Asian population cohorts where the c.4056G>C variant is found at a higher allele frequency. Functional studies in CHO cell lines indicate the p.Gln1352His change decreases CFTR protein expression and chloride channel function (Lee et al. 2003. PubMed ID: 12952861; Fujiki et al. 2004. PubMed ID: 15121783; Ngiam et al. 2006. PubMed ID: 16678503). However, no family studies have been conducted to determine if the c.4056G>C variant segregates with disease in individual families and to our knowledge, no homozygous c.4056G>C individuals have been reported with a CFTR-related disorder. This variant has been observed with a minor allele frequency of ~1.3% in East Asians, including 3 homozygous individuals. The c.4056G>C has several conflicting interpretations in ClinVar ranging from benign to pathogenic (https://www.ncbi.nlm.nih.gov/clinvar/variation/7237). It is possible that the c.4056G>C variant exhibits incomplete penetrance or is a risk allele for disease. However, without additional conclusive evidence, the clinical significance of this variant remains uncertain. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
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Likely pathogenic
(May 12, 2021)
N
Not contributing to aggregate classification
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no assertion criteria provided
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CFTR-related disorders |
Genome Diagnostics Laboratory, The Hospital for Sick Children
Accession: SCV002507474.1
First in ClinVar: May 16, 2022 Last updated: May 16, 2022 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
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Uncertain significance
(Mar 04, 2026)
N
Not contributing to aggregate classification
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no assertion criteria provided
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not provided |
Dasa
Accession: SCV007667115.1
First in ClinVar: Aug 22, 2026 Last updated: Aug 22, 2026 |
Comment:
show
NM_000492.4(CFTR):c.4056G>C (p.Gln1352His) is a missense variant that results in the substitution of glutamine with histidine. This variant has been recurrently observed in individuals with CFTR-related disorders (PMID: 17719933; PMID: 20021716; PMID: 26089335; PMID: 27578509; PMID: 28608624). Functional evidence supports an impact on the gene or gene product. This classification is supported by population frequency inconsistent with a disease-causing role. Computational prediction algorithms are consistent with a deleterious effect. The currently available literature and clinical evidence are not sufficient to establish a definitive association between this variant and the reported condition. Therefore, this variant is classified as a variant of uncertain significance. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
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Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| Genetic syndromes leading to male infertility: a systematic review. | Cheng LG | Fertility and sterility | 2025 | PMID: 40122225 |
| Genetic diagnosis and outcomes of intracytoplasmic sperm injection in South Chinese patients with congenital bilateral aplasia of the vas deferens. | Hu H | Basic and clinical andrology | 2024 | PMID: 39402445 |
| Compound heterozygous CFTR variants (Q1352H and 5T; TG13) in a Chinese patient with cystic fibrosis. | Guo R | Diagnostic pathology | 2024 | PMID: 39107787 |
| In vitro modulator responsiveness of 655 CFTR variants found in people with cystic fibrosis. | Bihler H | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2024 | PMID: 38388235 |
| A comprehensive review of cystic fibrosis in Africa and Asia. | Abubakar Bobbo K | Saudi journal of biological sciences | 2023 | PMID: 37313453 |
| The Association between CFTR Gene Mutation Heterozygosity and Asthma Development: A Systematic Review. | Koumpagioti D | Journal of clinical medicine | 2023 | PMID: 36983403 |
| Correlation between CFTR variants and outcomes of ART in patients with CAVD in Central China. | Qu X | Scientific reports | 2023 | PMID: 36604502 |
| Cystic Fibrosis Screen Positive, Inconclusive Diagnosis Genotypes in People with Cystic Fibrosis from the U.S. Patient Registry. | Salinas DB | Annals of the American Thoracic Society | 2023 | PMID: 36409994 |
| Congenital absence of the vas deferens with hypospadias or without hypospadias: Phenotypic findings and genetic considerations. | Fang J | Frontiers in genetics | 2022 | PMID: 36437957 |
| Analysis of clinically relevant variants from ancestrally diverse Asian genomes. | Chan SH | Nature communications | 2022 | PMID: 36335097 |
| ECFS standards of care on CFTR-related disorders: Diagnostic criteria of CFTR dysfunction. | Sermet-Gaudelus I | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2022 | PMID: 36207272 |
| Heterogeneous spectrum of CFTR gene mutations in Chinese patients with CAVD and the dilemma of genetic blocking strategy. | Feng J | Reproduction (Cambridge, England) | 2022 | PMID: 35913788 |
| Clinical exome sequencing of 1000 families with complex immune phenotypes: Toward comprehensive genomic evaluations. | Similuk MN | The Journal of allergy and clinical immunology | 2022 | PMID: 35753512 |
| Systematic estimation of cystic fibrosis prevalence in Chinese and genetic spectrum comparison to Caucasians. | Ni Q | Orphanet journal of rare diseases | 2022 | PMID: 35313924 |
| Genetic analysis and intracytoplasmic sperm injection outcomes of Chinese patients with congenital bilateral absence of vas deferens. | Cheng H | Journal of assisted reproduction and genetics | 2022 | PMID: 35119551 |
| Mutations in CFTR genes are associated with oligoasthenospermia in infertile men undergoing IVF. | Li Q | Andrologia | 2022 | PMID: 34931337 |
| Genetic mutation analysis of 22 patients with congenital absence of vas deferens: a single-center study†. | Tan MQ | Biology of reproduction | 2022 | PMID: 34673937 |
| A review of cystic fibrosis: Basic and clinical aspects. | Chen Q | Animal models and experimental medicine | 2021 | PMID: 34557648 |
| Etiologic distribution and clinical characteristics of pediatric diabetes in 276 children and adolescents with diabetes at a single academic center. | Kim JH | BMC pediatrics | 2021 | PMID: 33663443 |
| A data set of variants derived from 1455 clinical and research exomes is efficient in variant prioritization for early-onset monogenic disorders in Indians. | Kausthubham N | Human mutation | 2021 | PMID: 33502066 |
| Andrological findings in infertile men with two (biallelic) CFTR mutations: results of a multicentre study in Germany and Austria comprising 71 patients. | Rudnik-Schöneborn S | Human reproduction (Oxford, England) | 2021 | PMID: 33374015 |
| Mutation analysis of the cystic fibrosis transmembrane conductance regulator gene in Chinese congenital absence of vas deferens patients. | Luo S | Gene | 2021 | PMID: 32777524 |
| Genomic, transcriptomic, and protein landscape profile of CFTR and cystic fibrosis. | Sanders M | Human genetics | 2021 | PMID: 32734384 |
| Genetics of the congenital absence of the vas deferens. | Bieth E | Human genetics | 2021 | PMID: 32025909 |
| Disordered Gut Microbiota in Children Who Have Chronic Pancreatitis and Different Functional Gene Mutations. | Wang W | Clinical and translational gastroenterology | 2020 | PMID: 32352720 |
| Cystic fibrosis newborn screening in Denmark: Experience from the first 2 years. | Skov M | Pediatric pulmonology | 2020 | PMID: 31682332 |
| A Vietnamese human genetic variation database. | Le VS | Human mutation | 2019 | PMID: 31180159 |
| Deletion of exons 16-17b of CFTR is frequently identified in Korean patients with cystic fibrosis. | Sohn YB | European journal of medical genetics | 2019 | PMID: 31136843 |
| The CFTR gene variants in Japanese children with idiopathic pancreatitis. | Iso M | Human genome variation | 2019 | PMID: 30992994 |
| Expanding the phenotypic and genetic spectrum of Chinese patients with congenital absence of vas deferens bearing CFTR and ADGRG2 alleles. | Yuan P | Andrology | 2019 | PMID: 30811104 |
| Next-generation sequencing for identifying genetic mutations in adults with bronchiectasis. | Guan WJ | Journal of thoracic disease | 2018 | PMID: 29997923 |
| Clinical characterization and diagnosis of cystic fibrosis through exome sequencing in Chinese infants with Bartter-syndrome-like hypokalemia alkalosis. | Qiu L | Frontiers of medicine | 2018 | PMID: 29520692 |
| Congenital bilateral absence of the vas deferens as an atypical form of cystic fibrosis: reproductive implications and genetic counseling. | de Souza DAS | Andrology | 2018 | PMID: 29216686 |
| The spectrum of genetic variants in hereditary pancreatic cancer includes Fanconi anemia genes. | Slavin TP | Familial cancer | 2018 | PMID: 28687971 |
| Four case reports of Chinese cystic fibrosis patients and literature review. | Xu J | Pediatric pulmonology | 2017 | PMID: 28608624 |
| CFTR-France, a national relational patient database for sharing genetic and phenotypic data associated with rare CFTR variants. | Claustres M | Human mutation | 2017 | PMID: 28603918 |
| PRSS1, SPINK1, CFTR, and CTRC Pathogenic Variants in Korean Patients With Idiopathic Pancreatitis. | Cho SM | Annals of laboratory medicine | 2016 | PMID: 27578509 |
| The Spectrum of CFTR Variants in Nonwhite Cystic Fibrosis Patients: Implications for Molecular Diagnostic Testing. | Schrijver I | The Journal of molecular diagnostics : JMD | 2016 | PMID: 26708955 |
| Utility of whole-genome sequencing for detection of newborn screening disorders in a population cohort of 1,696 neonates. | Bodian DL | Genetics in medicine : official journal of the American College of Medical Genetics | 2016 | PMID: 26334177 |
| Low-frequency germline variants across 6p22.2-6p21.33 are associated with non-obstructive azoospermia in Han Chinese men. | Ni B | Human molecular genetics | 2015 | PMID: 26199320 |
| Functional characteristics of L1156F-CFTR associated with alcoholic chronic pancreatitis in Japanese. | Kondo S | American journal of physiology. Gastrointestinal and liver physiology | 2015 | PMID: 26089335 |
| Targeted next-generation sequencing effectively analyzed the cystic fibrosis transmembrane conductance regulator gene in pancreatitis. | Nakano E | Digestive diseases and sciences | 2015 | PMID: 25492507 |
| Association of CFTR gene variants with nontuberculous mycobacterial lung disease in a Korean population with a low prevalence of cystic fibrosis. | Jang MA | Journal of human genetics | 2013 | PMID: 23514810 |
| Mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) in Chinese patients with congenital bilateral absence of vas deferens. | Li H | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2012 | PMID: 22483971 |
| Heterogeneous spectrum of CFTR gene mutations in Korean patients with cystic fibrosis. | Jung H | The Korean journal of laboratory medicine | 2011 | PMID: 21779199 |
| Common CFTR haplotypes and susceptibility to chronic pancreatitis and congenital bilateral absence of the vas deferens. | Steiner B | Human mutation | 2011 | PMID: 21520337 |
| A Japanese adult case of forme fruste cystic fibrosis. | Oka H | Internal medicine (Tokyo, Japan) | 2010 | PMID: 20558957 |
| Distribution of CFTR variations in an Indonesian enteric fever cohort. | van de Vosse E | Clinical infectious diseases : an official publication of the Infectious Diseases Society of America | 2010 | PMID: 20233062 |
| Independent contribution of common CFTR variants to chronic pancreatitis. | de Cid R | Pancreas | 2010 | PMID: 19812525 |
| Cystic fibrosis transmembrane conductance regulator mutations in azoospermic and oligospermic men and their partners. | Gallati S | Reproductive biomedicine online | 2009 | PMID: 20021716 |
| Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutation associated with a congenital bilateral absence of vas deferens. | Sakamoto H | International journal of urology : official journal of the Japanese Urological Association | 2008 | PMID: 18304229 |
| Primary sclerosing cholangitis in childhood is associated with abnormalities in cystic fibrosis-mediated chloride channel function. | Pall H | The Journal of pediatrics | 2007 | PMID: 17719933 |
| Spectrum of mutations and variants/haplotypes of CFTR and genotype-phenotype correlation in idiopathic chronic pancreatitis and controls in Chinese by complete analysis. | Chang MC | Clinical genetics | 2007 | PMID: 17539902 |
| Detection of cystic fibrosis transmembrane conductance regulator (CFTR) gene rearrangements enriches the mutation spectrum in congenital bilateral absence of the vas deferens and impacts on genetic counselling. | Ratbi I | Human reproduction (Oxford, England) | 2007 | PMID: 17329263 |
| Identification of CFTR, PRSS1, and SPINK1 mutations in 381 patients with pancreatitis. | Keiles S | Pancreas | 2006 | PMID: 17003641 |
| Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutations in Asians with chronic pulmonary disease: a pilot study. | Ngiam NS | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2006 | PMID: 16678503 |
| Detection of F508del mutation in cystic fibrosis transmembrane conductance regulator gene mutation among Malays. | Zilfalil BA | Singapore medical journal | 2006 | PMID: 16435054 |
| Spectrum of CFTR mutations on Réunion Island: impact on neonatal screening. | Bienvenu T | Human biology | 2005 | PMID: 16596947 |
| Mutation analysis of SPINK1 and CFTR gene in Korean patients with alcoholic chronic pancreatitis. | Lee KH | Digestive diseases and sciences | 2005 | PMID: 16187186 |
| Genetic evidence for CFTR dysfunction in Japanese: background for chronic pancreatitis. | Fujiki K | Journal of medical genetics | 2004 | PMID: 15121783 |
| CFTR gene mutations in Japanese individuals with congenital bilateral absence of the vas deferens. | Anzai C | Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society | 2003 | PMID: 15463840 |
| A haplotype-based molecular analysis of CFTR mutations associated with respiratory and pancreatic diseases. | Lee JH | Human molecular genetics | 2003 | PMID: 12952861 |
| Distinct spectrum of CFTR gene mutations in congenital absence of vas deferens. | Dörk T | Human genetics | 1997 | PMID: 9272157 |
| http://www.egl-eurofins.com/emvclass/emvclass.php?approved_symbol=CFTR | - | - | - | - |
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Text-mined citations for rs113857788 ...
HelpRecord last updated Aug 22, 2026
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.
