VCV000619951.3 - ClinVar

NC_000019.10:g.44905579T>G

Germline

Classification

no assertion criteria provided. Learn more about how ClinVar calculates review status.

drug response
drug response (1)

This classification is based on the single submission received

The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.

Somatic

No data submitted for somatic clinical impact

Somatic

No data submitted for oncogenicity

Variant Details

Identifiers

NC_000019.10:g.44905579T>G

Variation ID: 619951 Accession: VCV000619951.3

Type and length

single nucleotide variant, 1 bp

Location

Cytogenetic: 19q13.32 19: 44905579 (GRCh38) [ NCBI UCSC ] 19: 45408836 (GRCh37) [ NCBI UCSC ]

Timeline in ClinVar

	First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.	Last submission Help The date of the most recent submission for each type of classification for this variant.	Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline	Sep 9, 2019	Oct 7, 2023	Aug 31, 2010

HGVS

Nucleotide	Protein	Molecular consequence
NC_000019.10:g.44905579T>G
NC_000019.9:g.45408836T>G
NG_007084.2:g.4798T>G
NG_042854.1:g.19360T>G

Protein change

Other names

Canonical SPDI

NC_000019.10:44905578:T:G

Global minor allele frequency (GMAF) Help The global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.

0.47185 (T)

Allele frequency Help The frequency of the allele represented by this VCV record.

The Genome Aggregation Database (gnomAD) 0.57561

1000 Genomes Project 30x 0.53498

Trans-Omics for Precision Medicine (TOPMed) 0.57738

1000 Genomes Project 0.52815

The Genome Aggregation Database (gnomAD) 0.58661

Links

ClinGen: CA14703614 dbSNP: rs405509 VarSome

Genes

Gene	OMIM	ClinGen Gene Dosage Sensitivity Curation		Variation Viewer Help Links to Variation Viewer, a genome browser to view variation data from NCBI databases.	Related variants
Gene	OMIM	HI score Help The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.	TS score Help The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.		Within gene Help The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants.	All Help The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene.
APOE		-	-	GRCh38 GRCh37	291	311

Conditions - Germline

Condition Help The condition for this variant-condition (RCV) record in ClinVar.	Classification Help The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions)	Review status Help The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status.	Last evaluated Help The most recent date that a submitter evaluated this variant for the condition.	Variation/condition record Help The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page.
Warfarin response	drug response (1)	no assertion criteria provided	Aug 31, 2010	RCV000845578.2

Submissions - Germline

Classification Help The submitted germline classification for each SCV record. (Last evaluated)	Review status Help Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria)	Condition Help The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant.	Submitter Help The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar.	Expand all rows Collapse all rows Help This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter.
drug response (Aug 31, 2010) C Contributing to aggregate classification	no assertion criteria provided	Warfarin response Drug used for hemorrhage	Pharmacogenomics Lab, Chungbuk National University Accession: SCV000889943.2 First in ClinVar: Sep 09, 2019 Last updated: Oct 07, 2023	Observation: 1 Collection method: research Allele origin: unknown Affected status: no more Observation 1 Collection method: research Allele origin: unknown Affected status: no Number of individuals with the variant: 125 Platform type: SNP Array Platform name: SNaPshot Genotyping

Citations for germline classification of this variant

There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs405509 ...

These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Jun 20, 2026