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NM_002234.4(KCNA5):c.79G>A (p.Gly27Ser)

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Interpretation:
Conflicting interpretations of pathogenicity​

Likely benign(2);Uncertain significance(1)

Review status:
criteria provided, conflicting interpretations
Submissions:
3 (Most recent: Aug 20, 2021)
Last evaluated:
Nov 13, 2020
Accession:
VCV000469598.7
Variation ID:
469598
Description:
single nucleotide variant
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NM_002234.4(KCNA5):c.79G>A (p.Gly27Ser)

Allele ID
462511
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
12p13.32
Genomic location
12: 5044226 (GRCh38) GRCh38 UCSC
12: 5153392 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000012.11:g.5153392G>A
NC_000012.12:g.5044226G>A
NG_012198.1:g.5308G>A
NM_002234.4:c.79G>A MANE Select NP_002225.2:p.Gly27Ser missense
Protein change
G27S
Other names
-
Canonical SPDI
NC_000012.12:5044225:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
0.00100 (A)

Allele frequency
Exome Aggregation Consortium (ExAC) 0.00017
The Genome Aggregation Database (gnomAD) 0.00061
Trans-Omics for Precision Medicine (TOPMed) 0.00111
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00044
1000 Genomes Project 0.00100
The Genome Aggregation Database (gnomAD), exomes 0.00027
Links
ClinGen: CA6399535
dbSNP: rs201238766
Varsome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Likely benign 1 criteria provided, single submitter Jul 1, 2019 RCV001576731.3
Conflicting interpretations of pathogenicity 2 criteria provided, conflicting interpretations Nov 13, 2020 RCV000542912.6
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
KCNA5 - - GRCh38
GRCh37
254 312

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Uncertain significance
(Oct 31, 2018)
criteria provided, single submitter
Method: clinical testing
Atrial fibrillation, familial, 7
Allele origin: unknown
Fulgent Genetics,Fulgent Genetics
Accession: SCV000894791.1
Submitted: (Nov 14, 2018)
Evidence details
Publications
PubMed (1)
DOI: 10.1038/gim.2015.30
Likely benign
(Nov 13, 2020)
criteria provided, single submitter
Method: clinical testing
Atrial fibrillation, familial, 7
Allele origin: germline
Invitae
Accession: SCV000646999.5
Submitted: (Jan 07, 2021)
Evidence details
Likely benign
(Jul 01, 2019)
criteria provided, single submitter
Method: clinical testing
Not Provided
Allele origin: germline
GeneDx
Accession: SCV001803978.1
Submitted: (Aug 20, 2021)
Evidence details

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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Title Author Journal Year Link
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Richards S Genetics in medicine : official journal of the American College of Medical Genetics 2015 PMID: 25741868

Text-mined citations for rs201238766...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Sep 29, 2021