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NM_004817.4(TJP2):c.2646G>A (p.Ala882=)

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Interpretation:
Benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
4 (Most recent: Jul 15, 2021)
Last evaluated:
Nov 19, 2018
Accession:
VCV000044098.5
Variation ID:
44098
Description:
single nucleotide variant
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NM_004817.4(TJP2):c.2646G>A (p.Ala882=)

Allele ID
53266
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
9q21.11
Genomic location
9: 69246769 (GRCh38) GRCh38 UCSC
9: 71861685 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NM_001170414.2:c.2577G>A NP_001163885.1:p.Ala859= synonymous
LRG_1201:g.150863G>A
LRG_1201t1:c.2646G>A LRG_1201p1:p.Ala882=
... more HGVS
Protein change
-
Other names
-
Canonical SPDI
NC_000009.12:69246768:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
0.00699 (A)

Allele frequency
The Genome Aggregation Database (gnomAD) 0.01323
Trans-Omics for Precision Medicine (TOPMed) 0.01324
The Genome Aggregation Database (gnomAD) 0.01172
Exome Aggregation Consortium (ExAC) 0.01426
1000 Genomes Project 0.00699
The Genome Aggregation Database (gnomAD), exomes 0.01405
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.01507
Links
ClinGen: CA133561
dbSNP: rs11788754
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Benign 2 criteria provided, multiple submitters, no conflicts May 7, 2012 RCV000037074.6
Benign 2 criteria provided, multiple submitters, no conflicts Nov 19, 2018 RCV000993326.3
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
TJP2 - - GRCh38
GRCh37
427 483

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Benign
(May 07, 2012)
criteria provided, single submitter
Method: clinical testing
not specified
Allele origin: germline
Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine
Accession: SCV000060730.6
Submitted: (Mar 21, 2019)
Evidence details
Comment:
"Ala859Ala in Exon 19 of TJP2: This variant is not expected to have clinical sig nificance because it does not alter an amino acid residue, … (more)
Benign
(Nov 19, 2018)
criteria provided, single submitter
Method: clinical testing
not provided
Allele origin: germline
Athena Diagnostics Inc
Accession: SCV001146188.1
Submitted: (Sep 25, 2019)
Evidence details
Benign
(-)
criteria provided, single submitter
Method: clinical testing
NOT SPECIFIED
Allele origin: germline
PreventionGenetics,PreventionGenetics
Accession: SCV000310678.1
Submitted: (Apr 28, 2016)
Evidence details
Benign
(May 07, 2018)
criteria provided, single submitter
Method: clinical testing
Not Provided
Allele origin: germline
GeneDx
Accession: SCV000717888.2
Submitted: (Jul 15, 2021)
Evidence details

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs11788754...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Nov 27, 2021