NM_000256.3(MYBPC3):c.814C>T (p.Arg272Cys)
criteria provided, multiple submitters, no conflicts. Learn more about how ClinVar calculates review status.
Uncertain significance (9)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_000256.3(MYBPC3):c.814C>T (p.Arg272Cys)
Variation ID: 42794 Accession: VCV000042794.29
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 11p11.2 11: 47347864 (GRCh38) [ NCBI UCSC ] 11: 47369415 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Mar 29, 2015 May 3, 2025 Jan 22, 2025 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_000256.3:c.814C>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_000247.2:p.Arg272Cys missense NC_000011.10:g.47347864G>A NC_000011.9:g.47369415G>A NG_007667.1:g.9839C>T LRG_386:g.9839C>T LRG_386t1:c.814C>T LRG_386p1:p.Arg272Cys Q14896:p.Arg272Cys - Protein change
- R272C
- Other names
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- Canonical SPDI
- NC_000011.10:47347863:G:A
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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The Genome Aggregation Database (gnomAD), exomes 0.00005
The Genome Aggregation Database (gnomAD) 0.00007
Trans-Omics for Precision Medicine (TOPMed) 0.00007
Exome Aggregation Consortium (ExAC) 0.00008
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| MYBPC3 | Sufficient evidence for dosage pathogenicity | No evidence available |
GRCh38 GRCh37 |
4727 | 4749 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Uncertain significance (1) |
criteria provided, single submitter
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Apr 1, 2020 | RCV000035670.9 | |
| Uncertain significance (2) |
criteria provided, multiple submitters, no conflicts
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Jan 6, 2025 | RCV000688740.11 | |
| Uncertain significance (1) |
criteria provided, single submitter
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Nov 13, 2023 | RCV000766314.4 | |
| Uncertain significance (1) |
criteria provided, single submitter
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May 8, 2018 | RCV000852436.1 | |
| Uncertain significance (1) |
criteria provided, single submitter
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Nov 27, 2023 | RCV001176805.5 | |
| Uncertain significance (1) |
criteria provided, single submitter
|
- | RCV001293073.1 | |
| Uncertain significance (1) |
criteria provided, single submitter
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Jan 22, 2025 | RCV004018767.2 | |
| Uncertain significance (1) |
criteria provided, single submitter
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Oct 17, 2023 | RCV005252706.2 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
Expand all rows
Collapse all rows
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Apr 01, 2020)
C
Contributing to aggregate classification
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criteria provided, single submitter
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not specified |
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
Accession: SCV000059321.6
First in ClinVar: May 03, 2013 Last updated: Jul 03, 2020 |
Comment:
show
The p.Arg272Cys variant in MYBPC3 has been reported in 5 individuals with hypertrophic cardiomyopathy (HCM) and in at least 3 individuals with dilated cardiomyopathy (DCM) as well as 1 possibly affected family member with DCM (Zeller 2006 PMID:16715312, Ehlermann 2008 PMID:18957093, Hershberger PMID:20215591, Millat 2010 PMID:20624503, Morales 2010 PMID: 20458009, Terilinck PMID:23140321, Walsh 2017 PMID: 27532257, Mademonet-Soler PMID:28771489, LMM data). One of the individuals with HCM (age 24) also carried a pathogenic variant in another HCM causing gene (Mademonet-Soler PMID: 28771489). This variant has also been reported by other clinical laboratories in ClinVar (Variation ID 42794) and has been identified in 0.008% (7/89912) of European chromosomes by gnomAD (http://gnomad.broadinstitute.org. Preliminary results from an vitro functional study provide some evidence that this variant decreases phosphorylation compared to the wild type (Ehlermann 2008 PMID:18957093); however, the clinical significance of this is uncertain. Computational prediction tools and conservation analyses suggest that this variant may impact the protein, though this information is not predictive enough to determine pathogenicity. In summary, the clinical significance of this variant is uncertain. ACMG/AMP Criteria applied: PP3. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 3
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Uncertain significance
(Nov 13, 2023)
C
Contributing to aggregate classification
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criteria provided, single submitter
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not provided |
GeneDx
Accession: SCV000490636.4
First in ClinVar: Mar 29, 2015 Last updated: Nov 25, 2023 |
Comment:
show
The p.(R272C) variant has been reported previously in association with DCM, HCM, and in one case of peri-partum cardiomyopathy (PMID: 16715312, 18957093, 20215591, 20458009, 20624503, 23140321); however, informative segregation and functional data were not provided.; In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 27896284, 20458009, 28771489, 23140321, 27532257, 22337857, 20215591, 20624503, 18957093, 29687901, 20800588, 16715312) (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
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Uncertain significance
(Oct 17, 2023)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Hypertrophic cardiomyopathy 4 |
3billion
Accession: SCV005904852.1
First in ClinVar: Apr 13, 2025 Last updated: Apr 13, 2025 |
Comment:
show
The variant is observed at an extremely low frequency in the gnomAD v2.1.1 dataset (total allele frequency: 0.004%). Predicted Consequence/Location: Missense variant Same nucleotide change resulting in same amino acid change has been previously reported to be associated with MYBPC3-related disorder (PMID: 16715312, 27532257). However, the evidence of pathogenicity is insufficient at this time. Therefore, this variant is classified as VUS according to the recommendation of ACMG/AMP guideline. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Platform type: exome
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Uncertain significance
(May 08, 2018)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Long QT Syndrome |
Center for Advanced Laboratory Medicine, UC San Diego Health, University of California San Diego
Accession: SCV000995128.1
First in ClinVar: Oct 12, 2019 Last updated: Oct 12, 2019 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Number of individuals with the variant: 1
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Uncertain significance
(-)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Primary dilated cardiomyopathy |
Genetics and Genomics Program, Sidra Medicine
Accession: SCV001434055.1
First in ClinVar: Feb 28, 2021 Last updated: Feb 28, 2021 |
Observation 1
Collection method: research
Allele origin: unknown
Affected status: yes
Number of individuals with the variant: 1
Test name: Trusight Cardio Sequencing
Platform type: next-gen sequencing
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Uncertain significance
(Jan 06, 2025)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Hypertrophic cardiomyopathy |
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000816363.8
First in ClinVar: Oct 10, 2018 Last updated: Feb 25, 2025 |
Comment:
show
This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 272 of the MYBPC3 protein (p.Arg272Cys). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This missense change has been observed in individuals with dilated cardiomyopathy (DCM), peripartum cardiomyopathy, or hypertrophic cardiomyopathy (HCM) (PMID: 16715312, 20458009, 20624503, 20800588, 23140321, 27532257, 28771489, 37652022). ClinVar contains an entry for this variant (Variation ID: 42794). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. Experimental studies are conflicting or provide insufficient evidence to determine the effect of this variant on MYBPC3 function (PMID: 18957093). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
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Uncertain significance
(Jan 22, 2025)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Cardiovascular phenotype |
Ambry Genetics
Accession: SCV004938724.2
First in ClinVar: May 01, 2024 Last updated: Apr 28, 2025 |
Comment:
show
The c.814C>T (p.R272C) alteration is located in exon 7 (coding exon 7) of the MYBPC3 gene. This alteration results from a C to T substitution at nucleotide position 814, causing the arginine (R) at amino acid position 272 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
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Uncertain Significance
(Feb 05, 2024)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Hypertrophic cardiomyopathy
(Autosomal dominant inheritance)
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All of Us Research Program, National Institutes of Health
Accession: SCV004834723.1
First in ClinVar: Apr 20, 2024 Last updated: Apr 20, 2024
Comment:
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of … (more)
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of variant classification. Additional details can be found in publication PMID: 35346344, PMCID: PMC8962531 (less)
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Comment:
show
This missense variant replaces arginine with cysteine at codon 272 of the MYBPC3 protein. Computational prediction is inconclusive regarding the impact of this variant on protein structure and function (internally defined REVEL score threshold 0.5 < inconclusive < 0.7, PMID: 27666373). An experimental study has suggested that this variant may affect phosphorylation of the MyBP-C motif (PMID: 18957093). This variant has been reported in an individual affected with dilated cardiomyopathy (PMID: 16715312), in an individual affected with peripartum cardiomyopathy (PMID: 20458009), and in four individuals affected with hypertrophic cardiomyopathy (PMID: 20624503, 27532257, 28771489). One of these individuals also carried a pathogenic p.Arg302Gln variant in the PRKAG2 gene, suggesting that this MYBPC3 variant may not have been the primary cause of disease in that individual (PMID: 28771489). This variant has been identified in 9/208346 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 18
Zygosity: 18 Single Heterozygotes
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Uncertain significance
(Nov 27, 2023)
C
Contributing to aggregate classification
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criteria provided, single submitter
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Cardiomyopathy |
Color Diagnostics, LLC DBA Color Health
Accession: SCV001340862.4
First in ClinVar: Jun 22, 2020 Last updated: May 03, 2025 |
Comment:
show
This missense variant replaces arginine with cysteine at codon 272 of the MYBPC3 protein. Computational prediction tool indicates this variant may have an uncertain impact on protein structure and function. An experimental study has suggested that this variant may affect phosphorylation of the MyBP-C motif (PMID: 18957093). This variant has been reported in an individual affected with dilated cardiomyopathy (PMID: 16715312), in an individual affected with peripartum cardiomyopathy (PMID: 20458009), and in four individuals affected with hypertrophic cardiomyopathy (PMID: 20624503, 27532257, 28771489). One of these individuals also carried a pathogenic p.Arg302Gln variant in the PRKAG2 gene, suggesting that this MYBPC3 variant may not have been the primary cause of disease in that individual (PMID: 28771489). This variant has been identified in 9/208346 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Platform type: NGS
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Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| The penetrance of rare variants in cardiomyopathy-associated genes: A cross-sectional approach to estimating penetrance for secondary findings. | McGurk KA | American journal of human genetics | 2023 | PMID: 37652022 |
| Additional value of screening for minor genes and copy number variants in hypertrophic cardiomyopathy. | Mademont-Soler I | PloS one | 2017 | PMID: 28771489 |
| Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. | Walsh R | Genetics in medicine : official journal of the American College of Medical Genetics | 2017 | PMID: 27532257 |
| A human MYBPC3 mutation appearing about 10 centuries ago results in a hypertrophic cardiomyopathy with delayed onset, moderate evolution but with a risk of sudden death. | Teirlinck CH | BMC medical genetics | 2012 | PMID: 23140321 |
| Development of a high resolution melting method for the detection of genetic variations in hypertrophic cardiomyopathy. | Millat G | Clinica chimica acta; international journal of clinical chemistry | 2010 | PMID: 20800588 |
| Prevalence and spectrum of mutations in a cohort of 192 unrelated patients with hypertrophic cardiomyopathy. | Millat G | European journal of medical genetics | 2010 | PMID: 20624503 |
| Rare variant mutations in pregnancy-associated or peripartum cardiomyopathy. | Morales A | Circulation | 2010 | PMID: 20458009 |
| Coding sequence rare variants identified in MYBPC3, MYH6, TPM1, TNNC1, and TNNI3 from 312 patients with familial or idiopathic dilated cardiomyopathy. | Hershberger RE | Circulation. Cardiovascular genetics | 2010 | PMID: 20215591 |
| Adverse events in families with hypertrophic or dilated cardiomyopathy and mutations in the MYBPC3 gene. | Ehlermann P | BMC medical genetics | 2008 | PMID: 18957093 |
| Large-scale mutation screening in patients with dilated or hypertrophic cardiomyopathy: a pilot study using DGGE. | Zeller R | Journal of molecular medicine (Berlin, Germany) | 2006 | PMID: 16715312 |
Text-mined citations for rs397516075 ...
HelpRecord last updated Dec 20, 2025
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.
