NC_000011.10:g.47335082_47335083del
criteria provided, multiple submitters, no conflicts. Learn more about how ClinVar calculates review status.
Pathogenic (22); Likely pathogenic (1)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NC_000011.10:g.47335082_47335083del
Variation ID: 42663 Accession: VCV000042663.55
- Type and length
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Deletion, 2 bp
- Location
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Cytogenetic: 11p11.2 11: 47335082-47335083 (GRCh38) [ NCBI UCSC ] 11: 47356633-47356634 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Sep 6, 2013 Aug 4, 2026 Feb 10, 2026 - HGVS
-
... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_000256.3:c.2864_2865delCT MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NC_000011.10:g.47335082_47335083del NC_000011.9:g.47356633_47356634del NG_007667.1:g.22620_22621del LRG_386:g.22620_22621del LRG_386t1:c.2864_2865del LRG_386p1:p.Pro955fs - Protein change
- -
- Other names
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p.955RfsX95
- Canonical SPDI
- NC_000011.10:47335081:AG:
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
- -
-
Allele frequency
Help
The frequency of the allele represented by this VCV record.
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The Genome Aggregation Database (gnomAD), exomes 0.00001
The Genome Aggregation Database (gnomAD) 0.00001
Trans-Omics for Precision Medicine (TOPMed) 0.00000
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| MYBPC3 | Sufficient evidence for dosage pathogenicity | No evidence available |
GRCh38 GRCh37 |
4727 | 4749 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Pathogenic/Likely pathogenic (9) |
criteria provided, multiple submitters, no conflicts
|
Jul 9, 2025 | RCV000035533.20 | |
| Pathogenic (2) |
criteria provided, single submitter
|
Jun 7, 2019 | RCV000054803.9 | |
| Pathogenic (5) |
criteria provided, multiple submitters, no conflicts
|
Dec 22, 2021 | RCV000158381.16 | |
| Pathogenic (1) |
criteria provided, single submitter
|
Apr 7, 2015 | RCV000208060.3 | |
| Pathogenic (6) |
criteria provided, multiple submitters, no conflicts
|
Jan 18, 2026 | RCV000225856.23 | |
| Pathogenic (3) |
criteria provided, multiple submitters, no conflicts
|
Feb 10, 2026 | RCV000589120.5 | |
| Pathogenic (2) |
criteria provided, multiple submitters, no conflicts
|
Apr 29, 2024 | RCV001526044.7 | |
| Pathogenic (2) |
criteria provided, multiple submitters, no conflicts
|
Mar 21, 2024 | RCV002496533.4 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
Expand all rows
Collapse all rows
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
|
|---|---|---|---|---|---|
|
Pathogenic
(Apr 07, 2015)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Primary familial hypertrophic cardiomyopathy |
Blueprint Genetics
Accession: SCV000264057.2
First in ClinVar: Feb 27, 2016 Last updated: Sep 22, 2018 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Number of individuals with the variant: 1
|
|
|
Pathogenic
(Feb 20, 2015)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy |
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
Accession: SCV000059183.5
First in ClinVar: May 03, 2013 Last updated: Apr 09, 2018 |
Comment:
show
The p.Pro955fs variant in MYBPC3 has been identified in >20 individuals with HCM and has segregated with disease in >10 individuals across multiple families (Ch ristiaans 2010, Marston 2009, Nannenberg 2011, Niimuri 1998, Probst 2011, Richar d 2003, Rodriguez-Garcia 2010, van Dijk 2009, LMM unpublished data). This varian t has also been reported in two individuals with LVNC, both of whom carried a se cond pathogenic variant in MYBPC3 (Probst 2011, Schaefer 2014). This variant was also absent from large population studies. This frameshift variant is predicted to alter the protein?s amino acid sequence beginning at position 955 and lead t o a premature termination codon 95 amino acids downstream. This alteration is th en predicted to lead to a truncated or absent protein. Heterozygous loss of MYBP C3 function is an established disease mechanism in individuals with HCM. In summ ary, this variant meets our criteria to be classified as pathogenic for HCM in a n autosomal dominant manner (http://www.partners.org/personalizedmedicine/LMM) b ased upon segregation studies and its predicted impact on the protein. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: not provided
Number of individuals with the variant: 38
|
|
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Pathogenic
(Dec 22, 2021)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
GeneDx
Accession: SCV000208316.16
First in ClinVar: Feb 24, 2015 Last updated: Mar 04, 2023 |
Comment:
show
Published functional study demonstrated that this deletion alters calcium sensitivity and the force-generating capacity of muscle cells (van Dijk et al. 2009); Frameshift variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; This variant is associated with the following publications: (PMID: 22569109, 24602869, 31513939, 31737537, 23549607, 22115648, 19356534, 21257752, 9562578, 27532257, 26914223, 19574547, 21551322, 26671970, 28794111, 28615295, 28214152, 29121657, 25351510, 20505798, 19273718, 30847666, 32480058, 27600940, 26090888, 25335496, 24793961, 24510615, 21252143, 33662488, 34540771, 31589614, 26582918, 33673806, 34135346) (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
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Pathogenic
(Jun 26, 2023)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cardiomyopathy |
CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario
Accession: SCV002042179.2
First in ClinVar: Dec 29, 2021 Last updated: Feb 04, 2024 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
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Pathogenic
(Oct 10, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cardiovascular phenotype |
Ambry Genetics
Accession: SCV000737349.5
First in ClinVar: Mar 17, 2018 Last updated: Jan 11, 2026 |
Comment:
show
The c.2864_2865delCT (p.P955Rfs*95) alteration, located in exon 27 (coding exon 27) of the MYBPC3 gene, consists of a deletion of 2 nucleotides from position 2864 to 2865, causing a translational frameshift with a predicted alternate stop codon after 95 amino acids. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. Based on data from gnomAD, the c.2864_2865delCT allele has an overall frequency of <0.001% (1/264126) total alleles studied. The highest observed frequency was 0.001% (1/120700) of European (non-Finnish) alleles. This variant (also reported as delCT955) was reported in individual(s) with features consistent with MYBPC3-related cardiomyopathy (Niimura, 1998; Marston, 2009; van Dijk, 2009; Christiaans, 2010; Schaefer, 2014). Based on the available evidence, this alteration is classified as pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Apr 20, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4
(Autosomal dominant inheritance)
|
Genetics and Molecular Pathology, SA Pathology
Accession: SCV002761465.2
First in ClinVar: Dec 17, 2022 Last updated: Jul 14, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Likely pathogenic
(-)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4
(Autosomal dominant inheritance)
|
Laboratory of Genetics and Molecular Cardiology, University of São Paulo
Study: Sarcomeric Human Cardiomyopathy Registry (ShaRe)
Accession: SCV000256180.1 First in ClinVar: Nov 04, 2015 Last updated: Nov 04, 2015 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Number of individuals with the variant: 1
|
|
|
Pathogenic
(Jun 20, 2017)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cardiovascular phenotype |
Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV000696326.1
First in ClinVar: Mar 17, 2018 Last updated: Mar 17, 2018 |
Comment:
show
Variant summary: The MYBPC3 c.2864_2865delCT (p.Pro955Argfs) variant results in a premature termination codon, predicted to cause a truncated or absent MYBPC3 protein due to nonsense mediated decay, which are commonly known mechanisms for disease. This variant is absent in 108262 control chromosomes. Multiple publications have cited this variant in affected individuals including its cosegregation with disease in a large HCM family (Niimura_1998). The variant of interest has been indicated to be a Dutch founder mutation (Christiaans_2010). In addition, multiple clinical diagnostic laboratories/reputable databases classified this variant as pathogenic. Taken together, this variant is classified as pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Oct 10, 2014)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4 |
Genome Diagnostics Laboratory, University Medical Center Utrecht
Study: VKGL Data-share Consensus
Accession: SCV000743546.1 First in ClinVar: Apr 19, 2018 Last updated: Apr 19, 2018 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Sep 21, 2015)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4 |
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center
Study: VKGL Data-share Consensus
Accession: SCV000744833.1 First in ClinVar: Apr 19, 2018 Last updated: Apr 19, 2018 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Mar 21, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4
Left ventricular noncompaction 10
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
Fulgent Genetics, Fulgent Genetics
Accession: SCV002810325.2
First in ClinVar: Dec 31, 2022 Last updated: Jan 25, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Sep 25, 2017)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4 |
Center of Genomic medicine, Geneva, University Hospital of Geneva
Accession: SCV000693467.3
First in ClinVar: Oct 22, 2016 Last updated: Apr 13, 2025 |
Comment:
show
This heterozygous frameshift variant in the MYBPC3 gene was identified in three members of the same family: the father, the daughter and the son. Both the father and the daughter were diagnosed with obstructive hypertrophic cardiomyopathy (less)
Observation: 1
Collection method: clinical testing
Allele origin: paternal
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: paternal
Affected status: yes
Age: 30-39 years
Sex: female
|
|
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Pathogenic
(Jun 07, 2019)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Left ventricular noncompaction 10
(Autosomal dominant inheritance)
|
Institute of Human Genetics Munich, TUM University Hospital
Accession: SCV001429937.2
First in ClinVar: Aug 23, 2020 Last updated: Apr 13, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: maternal
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: maternal
Affected status: yes
Zygosity: 1 Single Heterozygote
Sex: male
Tissue: blood
|
|
|
Pathogenic
(Apr 29, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cardiomyopathy |
Color Diagnostics, LLC DBA Color Health
Accession: SCV001736315.3
First in ClinVar: Jun 19, 2021 Last updated: May 03, 2025 |
Comment:
show
This variant deletes 2 nucleotides in exon 27 of the MYBPC3 gene, creating a frameshift and premature translation stop signal. This variant is expected to result in an absent or non-functional protein product. This variant has been reported in over 20 individuals affected with hypertrophic cardiomyopathy (PMID: 12707239, 19273718, 20433692, 22115648, 24602869, 34542152, 34680864, 35288587, 35626289, 35653365, 36166435). It has been shown that this variant segregates with disease in multiple families (PMID: 20433692, 24602869, 34680864). Additionally, the variant has been reported in two individuals affected with left ventricular noncompaction (PMID: 21551322, 24602869). This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). Loss of MYBPC3 function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Platform type: NGS
|
|
|
Pathogenic
(May 27, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4 |
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
Accession: SCV005398465.3
First in ClinVar: Nov 24, 2024 Last updated: Dec 01, 2025 |
Comment:
show
This variant is classified as Pathogenic. Evidence in support of pathogenic classification: Variant is predicted to cause nonsense-mediated decay (NMD) and loss of protein (premature termination codon is located at least 54 nucleotides upstream of the final exon-exon junction); Variant is present in gnomAD <0.01 (v4: 11 heterozygote(s), 0 homozygote(s)) ; This variant has strong previous evidence of pathogenicity in unrelated individuals. This recurrent variant has previously been reported as pathogenic in multiple patients, both at VCGS and externally, and has been shown to segregate in families with autosomal dominant hypertrophic cardiomyopathy (ClinVar, PMID: 9562578, PMID: 28615295); Other NMD-predicted variant(s) comparable to the one identified in this case have very strong previous evidence for pathogenicity (DECIPHER). Additional information: This variant is heterozygous; This gene is associated with both recessive and dominant disease. Dominant inheritance is frequently reported in adult onset conditions and recessive inheritance results in a more severe early onset phenotype (OMIM); Loss of function is a known mechanism of disease in this gene and is associated with hypertrophic cardiomyopathy 4 (HCM; MIM#115197); Variants in this gene are known to have variable expressivity (PMID: 32841044); Inheritance information for this variant is not currently available in this individual. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: no
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: no
|
|
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Pathogenic
(Jan 18, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy |
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000284234.13
First in ClinVar: Jul 01, 2016 Last updated: Feb 15, 2026 |
Comment:
show
This sequence change creates a premature translational stop signal (p.Pro955Argfs*95) in the MYBPC3 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in MYBPC3 are known to be pathogenic (PMID: 19574547). This variant is present in population databases (rs397515990, gnomAD 0.0008%). This premature translational stop signal has been observed in individuals with hypertrophic cardiomyopathy (PMID: 19273718, 20433692, 21551322). ClinVar contains an entry for this variant (Variation ID: 42663). For these reasons, this variant has been classified as Pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Jul 09, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4
(Autosomal dominant inheritance)
|
Variantyx, Inc.
Accession: SCV007593602.1
First in ClinVar: May 16, 2026 Last updated: May 16, 2026 |
Comment:
show
This is a frameshift variant in the MYBPC3 gene (OMIM: 600958). Pathogenic variants in this gene have been associated with autosomal dominant hypertrophic cardiomyopathy 4. This variant introduces a premature termination codon in exon 27 out of 35 and is expected to result in loss of function, which is a known disease mechanism for MYBPC3 in this disorder (PMID: 19574547) (PVS1). This variant has been reported in several unrelated affected individuals (PMID: 19273718, 24602869, 19574547, 9562578, 21551322, 20505798, 19356534) (PS4). It has a 0.0009% maximum allele frequency in non-founder control populations (https://gnomad.broadinstitute.org/) (PM2). Based on the current evidence, this variant is classified as pathogenic for autosomal dominant hypertrophic cardiomyopathy 4. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
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Pathogenic
(Jul 17, 2014)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Stanford Center for Inherited Cardiovascular Disease, Stanford University
Accession: SCV000280249.2
First in ClinVar: May 29, 2016 Last updated: Aug 04, 2026 |
Observation: 1
Collection method: provider interpretation
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: provider interpretation
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Oct 31, 2018)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy |
Center for Human Genetics, University of Leuven
Accession: SCV000886767.1
First in ClinVar: May 02, 2019 Last updated: May 02, 2019 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Jul 11, 2023)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy
(Autosomal dominant inheritance)
|
All of Us Research Program, National Institutes of Health
Accession: SCV004836700.1
First in ClinVar: Apr 20, 2024 Last updated: Apr 20, 2024
Comment:
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of … (more)
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of variant classification. Additional details can be found in publication PMID: 35346344, PMCID: PMC8962531 (less)
|
Comment:
show
This variant deletes 2 nucleotides in exon 27 of the MYBPC3 gene, creating a frameshift and premature translation stop signal. This variant is expected to result in an absent or non-functional protein product. To our knowledge, functional studies have not been reported for this variant. This variant has been reported in individuals affected with hypertrophic cardiomyopathy (HCM)(PMID: 12707239, 19273718, 20433692, 20505798, 22115648, 24602869, 32841044). It has been shown that this variant segregates with disease in families (PMID: 20433692, 24602869). Additionally, the variant has been reported in 2 individuals affected with left ventricular noncompaction (LVNC) (PMID: 21551322, 24602869). This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). Loss of MYBPC3 function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 3
Zygosity: 3 Single Heterozygotes
|
|
|
Pathogenic
(Aug 15, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hypertrophic cardiomyopathy 4
Left ventricular noncompaction 10
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
New York Genome Center
Accession: SCV003925265.2
First in ClinVar: May 20, 2023 Last updated: Dec 22, 2024 |
Comment:
show
The c.2864_2865del, p.(Pro955ArgfsTer95) variant identified in the MYBPC3 gene is a deletion of two nucleotides within exon 27/35 which leads to a frameshift of the protein at amino acid 955/1275, and is predicted to lead to the premature termination of the protein approximately 95 amino acids downstream. This variant is found with low frequency in population databases gnomADv2.1.1, gnomADv3.1.2, TOPMed Freeze 8, All of Us (allele frequency=6.80e-6) suggesting it is not a common benign variant in the populations represented in those databases. This variant is reported as Pathogenic/Likely Pathogenic in ClinVar(VarID:42663) and has been reported in many individuals in the literature with cardiomyopathy [PMID:19273718, 20433692, 24510615, others]. Given its deleterious nature, low frequency in population databases, and observation in multiple affected individuals in the literature, the c.2864_2865del,p.(Pro955ArgfsTer95) variant identified in the MYBPC3 gene is reported as Pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Clinical Features:
Cardiomyopathy (present)
Test name: whole genome sequencing
Zygosity: 1 Single Heterozygote
Secondary finding: no
Platform name: NovaSeq 6000
|
|
|
Pathogenic
(Oct 23, 2020)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided
(Unknown mechanism)
|
Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen
Accession: SCV001448130.2
First in ClinVar: Nov 28, 2020 Last updated: Apr 13, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Clinical Features:
Hypertrophic cardiomyopathy (present) , Tachycardia (present) , Atrial fibrillation (present)
Sex: female
|
|
|
Pathogenic
(Feb 10, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cardiovascular phenotype |
Molecular Diagnostic Laboratory for Inherited Cardiovascular Disease, Montreal Heart Institute
Accession: SCV007542401.1
First in ClinVar: Apr 25, 2026 Last updated: Apr 25, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Hypertrophic cardiomyopathy 4 |
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV000733033.1 First in ClinVar: Apr 09, 2018 Last updated: Apr 09, 2018 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Dec 12, 2019)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Hypertrophic cardiomyopathy
(Autosomal dominant inheritance)
|
Agnes Ginges Centre for Molecular Cardiology, Centenary Institute
Accession: SCV001430863.1
First in ClinVar: Aug 23, 2020 Last updated: Aug 23, 2020 |
Comment:
show
The MYBPC3 Pro955Argfs*95 has been seen in many HCM probands, is a well established Dutch Founder and has been reported to segregate in several families. A study comparing contractile performance in cardiac muscle samples showed that Pro955Argfs*95 reduced cMyBPC protein levels. This lowered protein level resulted in a decline in the maximum force of the cells and correlated to reduced protein expression consequently altering calcium homeostasis and phospholyration (van Dijk SJ, et al., 2009). This variant is absent in the Genome Aggregation Database (http://gnomad.broadinstitute.org/). We have identified this variant in 9 HCM probands (Ingles et al., 2017; Ross et al., 2017; Ingles et al., 2015). Based on the adapted ACMG guidelines (Kelly et al., 2018), this variant results in loss of function of MYBPC3 (PVS1), has been reported in more than 15 HCM probands (PS4), cosegregates with HCM in families (PP1_strong) and is rare in the general population (PM2), therefore we classify MYBPC3 Pro955Argfs*95 as "pathogenic". (less)
Observation: 1
Collection method: research
Allele origin: germline
Affected status: yes
Observation 1
Collection method: research
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not provided |
Clinical Genetics, Academic Medical Center
Study: VKGL Data-share Consensus
Accession: SCV001923951.1 First in ClinVar: Sep 24, 2021 Last updated: Sep 24, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Jun 02, 2022)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Hypertrophic cardiomyopathy 4 |
Clinical Genetics Laboratory, University Hospital Schleswig-Holstein
Accession: SCV002583474.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
hypertrophic cardiomyopathy |
Zaffran Lab, Genetics of Cardiac Diseases Laboratory, Marseille Medical Genetics
Accession: SCV005374566.1
First in ClinVar: Oct 20, 2024 Last updated: Oct 20, 2024 |
Observation: 1
Collection method: research
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: research
Allele origin: unknown
Affected status: yes
|
|
|
Pathogenic
(Aug 01, 2011)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
LEFT VENTRICULAR NONCOMPACTION 10 |
OMIM
Accession: SCV000083048.1
First in ClinVar: Sep 06, 2013 Last updated: Sep 06, 2013 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Comment on evidence:
In a white woman of western European descent with left ventricular noncompaction (LVNC10; see 615396), who had nonsustained ventricular flutter and received an implantable cardioverter-defibrillator, … (more)
In a white woman of western European descent with left ventricular noncompaction (LVNC10; see 615396), who had nonsustained ventricular flutter and received an implantable cardioverter-defibrillator, Probst et al. (2011) identified heterozygosity for a 2-bp deletion (c.2919_2920delCT) in exon 28 of the MYBPC3 gene, causing a frameshift predicted to result in a premature termination codon in exon 30 (Pro955ArgfsTer95). The mutation was also detected in her 14-year-old unaffected daughter. (less)
|
|
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Pathogenic
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not provided |
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+
Study: VKGL Data-share Consensus
Accession: SCV001951250.1 First in ClinVar: Oct 02, 2021 Last updated: Oct 02, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| Genomic findings of hypertrophic and dilated cardiomyopathy characterized in a Thai clinical genetics service. | Trachoo O | PloS one | 2022 | PMID: 36166435 |
| Molecular genetics in 4408 cardiomyopathy probands and 3008 relatives in Norway: 17 years of genetic testing in a national laboratory. | Stava TT | European journal of preventive cardiology | 2022 | PMID: 35653365 |
| The Genetic Architecture of Hypertrophic Cardiomyopathy in Hungary: Analysis of 242 Patients with a Panel of 98 Genes. | Sepp R | Diagnostics (Basel, Switzerland) | 2022 | PMID: 35626289 |
| Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy. | Lesurf R | NPJ genomic medicine | 2022 | PMID: 35288587 |
| A genome-first approach to rare variants in hypertrophic cardiomyopathy genes MYBPC3 and MYH7 in a medical biobank. | Park J | Human molecular genetics | 2022 | PMID: 34542152 |
| Myocardial Deformation Analysis in MYBPC3 and MYH7 Related Sarcomeric Hypertrophic Cardiomyopathy-The Graz Hypertrophic Cardiomyopathy Registry. | Höller V | Genes | 2021 | PMID: 34680864 |
| Spatial and Functional Distribution of MYBPC3 Pathogenic Variants and Clinical Outcomes in Patients With Hypertrophic Cardiomyopathy. | Helms AS | Circulation. Genomic and precision medicine | 2020 | PMID: 32841044 |
| Data on exercise and cardiac imaging in a patient cohort with hypertrophic cardiomyopathy. | Dejgaard LA | Data in brief | 2017 | PMID: 28971120 |
| Burden of Recurrent and Ancestral Mutations in Families With Hypertrophic Cardiomyopathy. | Ross SB | Circulation. Cardiovascular genetics | 2017 | PMID: 28615295 |
| Nonfamilial Hypertrophic Cardiomyopathy: Prevalence, Natural History, and Clinical Implications. | Ingles J | Circulation. Cardiovascular genetics | 2017 | PMID: 28408708 |
| Targeted next-generation sequencing helps to decipher the genetic and phenotypic heterogeneity of hypertrophic cardiomyopathy. | Cecconi M | International journal of molecular medicine | 2016 | PMID: 27600940 |
| Application of Genetic Testing in Hypertrophic Cardiomyopathy for Preclinical Disease Detection. | Ingles J | Circulation. Cardiovascular genetics | 2015 | PMID: 26671970 |
| Screening Mutations of MYBPC3 in 114 Unrelated Patients with Hypertrophic Cardiomyopathy by Targeted Capture and Next-generation Sequencing. | Liu X | Scientific reports | 2015 | PMID: 26090888 |
| Defining phenotypes and disease progression in sarcomeric cardiomyopathies: contemporary role of clinical investigations. | Olivotto I | Cardiovascular research | 2015 | PMID: 25631583 |
| Compound heterozygous or homozygous truncating MYBPC3 mutations cause lethal cardiomyopathy with features of noncompaction and septal defects. | Wessels MW | European journal of human genetics : EJHG | 2015 | PMID: 25335496 |
| Detection of mutations in symptomatic patients with hypertrophic cardiomyopathy in Taiwan. | Chiou KR | Journal of cardiology | 2015 | PMID: 25086479 |
| Characterization of a phenotype-based genetic test prediction score for unrelated patients with hypertrophic cardiomyopathy. | Bos JM | Mayo Clinic proceedings | 2014 | PMID: 24793961 |
| Next-generation sequencing (NGS) as a fast molecular diagnosis tool for left ventricular noncompaction in an infant with compound mutations in the MYBPC3 gene. | Schaefer E | European journal of medical genetics | 2014 | PMID: 24602869 |
| Distinguishing hypertrophic cardiomyopathy-associated mutations from background genetic noise. | Kapplinger JD | Journal of cardiovascular translational research | 2014 | PMID: 24510615 |
| T1 measurements identify extracellular volume expansion in hypertrophic cardiomyopathy sarcomere mutation carriers with and without left ventricular hypertrophy. | Ho CY | Circulation. Cardiovascular imaging | 2013 | PMID: 23549607 |
| Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection. | Stubbs A | Journal of clinical bioinformatics | 2012 | PMID: 23164068 |
| The role of renin-angiotensin-aldosterone system polymorphisms in phenotypic expression of MYBPC3-related hypertrophic cardiomyopathy. | Kolder IC | European journal of human genetics : EJHG | 2012 | PMID: 22569109 |
| Mortality risk of untreated myosin-binding protein C-related hypertrophic cardiomyopathy: insight into the natural history. | Nannenberg EA | Journal of the American College of Cardiology | 2011 | PMID: 22115648 |
| Sarcomere gene mutations in isolated left ventricular noncompaction cardiomyopathy do not predict clinical phenotype. | Probst S | Circulation. Cardiovascular genetics | 2011 | PMID: 21551322 |
| Targeted next-generation sequencing for the molecular genetic diagnostics of cardiomyopathies. | Meder B | Circulation. Cardiovascular genetics | 2011 | PMID: 21252143 |
| Founder mutations in hypertrophic cardiomyopathy patients in the Netherlands. | Christiaans I | Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation | 2010 | PMID: 20505798 |
| Screening mutations in myosin binding protein C3 gene in a cohort of patients with Hypertrophic Cardiomyopathy. | Rodríguez-García MI | BMC medical genetics | 2010 | PMID: 20433692 |
| Evidence from human myectomy samples that MYBPC3 mutations cause hypertrophic cardiomyopathy through haploinsufficiency. | Marston S | Circulation research | 2009 | PMID: 19574547 |
| Diastolic abnormalities as the first feature of hypertrophic cardiomyopathy in Dutch myosin-binding protein C founder mutations. | Michels M | JACC. Cardiovascular imaging | 2009 | PMID: 19356534 |
| Cardiac myosin-binding protein C mutations and hypertrophic cardiomyopathy: haploinsufficiency, deranged phosphorylation, and cardiomyocyte dysfunction. | van Dijk SJ | Circulation | 2009 | PMID: 19273718 |
| Myosin binding protein C mutations and compound heterozygosity in hypertrophic cardiomyopathy. | Van Driest SL | Journal of the American College of Cardiology | 2004 | PMID: 15519027 |
| Hypertrophic cardiomyopathy: distribution of disease genes, spectrum of mutations, and implications for a molecular diagnosis strategy. | Richard P | Circulation | 2003 | PMID: 12707239 |
| Mutations in the gene for cardiac myosin-binding protein C and late-onset familial hypertrophic cardiomyopathy. | Niimura H | The New England journal of medicine | 1998 | PMID: 9562578 |
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Text-mined citations for rs397515990 ...
HelpRecord last updated Aug 04, 2026
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.
