NM_001048174.2(MUTYH):c.930G>C (p.Gln310His)
criteria provided, multiple submitters, no conflicts. Learn more about how ClinVar calculates review status.
Benign (13)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NM_001048174.2(MUTYH):c.930G>C (p.Gln310His)
Variation ID: 41767 Accession: VCV000041767.57
- Type and length
-
single nucleotide variant, 1 bp
- Location
-
Cytogenetic: 1p34.1 1: 45331833 (GRCh38) [ NCBI UCSC ] 1: 45797505 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Apr 12, 2013 Feb 15, 2026 Feb 4, 2026 - HGVS
-
... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001048174.2:c.930G>C MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001041639.1:p.Gln310His missense NM_001128425.2:c.1014G>C MANE Plus Clinical Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001121897.1:p.Gln338His missense NM_001048171.2:c.930G>C NP_001041636.2:p.Gln310His missense NM_001048172.2:c.933G>C NP_001041637.1:p.Gln311His missense NM_001048173.2:c.930G>C NP_001041638.1:p.Gln310His missense NM_001293190.2:c.975G>C NP_001280119.1:p.Gln325His missense NM_001293191.2:c.963G>C NP_001280120.1:p.Gln321His missense NM_001293192.2:c.654G>C NP_001280121.1:p.Gln218His missense NM_001293195.2:c.930G>C NP_001280124.1:p.Gln310His missense NM_001293196.2:c.654G>C NP_001280125.1:p.Gln218His missense NM_001350650.2:c.585G>C NP_001337579.1:p.Gln195His missense NM_001350651.2:c.585G>C NP_001337580.1:p.Gln195His missense NM_012222.3:c.1005G>C NP_036354.1:p.Gln335His missense NR_146882.2:n.1158G>C non-coding transcript variant NR_146883.2:n.1007G>C non-coding transcript variant NC_000001.11:g.45331833C>G NC_000001.10:g.45797505C>G NG_008189.1:g.13638G>C LRG_220:g.13638G>C LRG_220t1:c.1014G>C LRG_220p1:p.Gln338His - Protein change
- Q338H, Q324H, Q310H, Q321H, Q335H, Q195H, Q311H, Q325H, Q218H
- Other names
- -
- Canonical SPDI
- NC_000001.11:45331832:C:G
-
Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
-
0.31350 (G)
-
Allele frequency
Help
The frequency of the allele represented by this VCV record.
-
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.25411
The Genome Aggregation Database (gnomAD), exomes 0.25969
The Genome Aggregation Database (gnomAD), exomes 0.29002
Exome Aggregation Consortium (ExAC) 0.29668
The Genome Aggregation Database (gnomAD) 0.26720
The Genome Aggregation Database (gnomAD) 0.26909
Trans-Omics for Precision Medicine (TOPMed) 0.28665
1000 Genomes Project 30x 0.31496
1000 Genomes Project 0.31350
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| MUTYH | Gene associated with autosomal recessive phenotype | No evidence available |
GRCh38 GRCh37 |
4078 | 4246 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Benign (4) |
criteria provided, multiple submitters, no conflicts
|
Jul 30, 2025 | RCV000034684.28 | |
| Benign (9) |
criteria provided, multiple submitters, no conflicts
|
May 12, 2017 | RCV000079500.40 | |
| Benign (4) |
criteria provided, multiple submitters, no conflicts
|
Jul 10, 2025 | RCV000131427.17 | |
| Benign (1) |
no assertion criteria provided
|
Jul 24, 2014 | RCV000144634.9 | |
| Benign (4) |
criteria provided, multiple submitters, no conflicts
|
Feb 4, 2026 | RCV000299432.29 | |
| Benign (1) |
no assertion criteria provided
|
- | RCV001270291.9 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
Expand all rows
Collapse all rows
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
|
|---|---|---|---|---|---|
|
Benign
(Mar 27, 2015)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hereditary cancer-predisposing syndrome |
Color Diagnostics, LLC DBA Color Health
Accession: SCV000537346.1
First in ClinVar: Mar 24, 2015 Last updated: Mar 24, 2015 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Platform type: NGS
|
|
|
Benign
(May 12, 2017)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not specified |
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
Accession: SCV000710869.1
First in ClinVar: Apr 09, 2018 Last updated: Apr 09, 2018 |
Comment:
show
p.Ser372Phe in exon 12 of MUTYH: This variant is not expected to have clinical s ignificance because it has been identified in 49% (15851/32596) of Latino chromo somes by the Genome Aggregation Database (gnomAD, http://gnomad.broadinstitute.o rg; dbSNP rs3219489). (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: not provided
Number of individuals with the variant: 1
|
|
|
Benign
(Mar 06, 2018)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Familial adenomatous polyposis 2 |
Illumina Laboratory Services, Illumina
Accession: SCV000357896.3
First in ClinVar: Dec 06, 2016 Last updated: May 31, 2020 |
Comment:
show
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Oct 28, 2014)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hereditary cancer-predisposing syndrome |
Ambry Genetics
Accession: SCV000186408.10
First in ClinVar: Aug 06, 2014 Last updated: May 01, 2024 |
Comment:
show
This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Feb 04, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Familial adenomatous polyposis 2 |
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000639247.9
First in ClinVar: Dec 26, 2017 Last updated: Feb 15, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Oct 02, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Familial adenomatous polyposis 2
(Autosomal recessive inheritance)
|
All of Us Research Program, National Institutes of Health
Accession: SCV004835125.2
First in ClinVar: Apr 20, 2024 Last updated: Dec 14, 2024
Comment:
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of … (more)
This study involves interpretation of variants in research participants for the purpose of population health screening. Participant phenotype was not available at the time of variant classification. Additional details can be found in publication PMID: 35346344, PMCID: PMC8962531 (less)
|
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 66786
Zygosity: 11148 Homozygotes, 15 Hemizygotes, 55623 Single Heterozygotes
|
|
|
Benign
(Jul 10, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Hereditary cancer-predisposing syndrome |
GeneKor MSA
Accession: SCV006311091.1
First in ClinVar: Aug 30, 2025 Last updated: Aug 30, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(-)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
NOT SPECIFIED |
PreventionGenetics, part of Exact Sciences
Accession: SCV000306733.1
First in ClinVar: Oct 02, 2016 Last updated: Oct 02, 2016 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Mar 03, 2015)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
GeneDx
Accession: SCV001940113.2
First in ClinVar: Sep 29, 2021 Last updated: Mar 04, 2023 |
Comment:
show
This variant is associated with the following publications: (PMID: 23108399, 22703879, 22780951, 22926731, 18422726, 20149637, 22466227, 18823566, 19161591, 23499241, 23460202, 24728327, 18534194, 26377631, 25820570, 27153395, 29954149, 28628107, 27705013, 31027119, 30564557, 23618615, 31104418) (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(Jul 07, 2023)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Familial adenomatous polyposis 2 |
KCCC/NGS Laboratory, Kuwait Cancer Control Center
Accession: SCV004016023.1
First in ClinVar: Jul 29, 2023 Last updated: Jul 29, 2023 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(-)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided
(Autosomal recessive inheritance)
|
Breakthrough Genomics, Breakthrough Genomics
Accession: SCV005281464.1
First in ClinVar: Sep 29, 2024 Last updated: Sep 29, 2024 |
Observation: 1
Collection method: not provided
Allele origin: germline
Affected status: yes
Observation 1
Collection method: not provided
Allele origin: germline
Affected status: yes
|
|
|
Benign
(Nov 12, 2014)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not specified |
Eurofins Ntd Llc (ga)
Accession: SCV000111382.9
First in ClinVar: Jan 17, 2014 Last updated: Apr 13, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 12
Zygosity: 1 Homozygote, 11 Single Heterozygotes
Sex: mixed
|
|
|
Benign
(Jul 30, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
Accession: SCV000604305.12
First in ClinVar: Oct 02, 2016 Last updated: Jan 24, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(Jul 24, 2014)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Carcinoma of colon |
Pathway Genomics
Accession: SCV000189961.1
First in ClinVar: Oct 19, 2014 Last updated: Oct 19, 2014 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not specified |
Mayo Clinic Laboratories, Mayo Clinic
Accession: SCV000691949.1
First in ClinVar: Feb 19, 2018 Last updated: Feb 19, 2018 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
Benign
(Jul 13, 2012)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not provided |
Biesecker Lab/Clinical Genomics Section, National Institutes of Health
Study: ClinSeq
Accession: SCV000043372.2 First in ClinVar: Apr 12, 2013 Last updated: Jun 08, 2025 |
Observation 1
Collection method: research
Allele origin: germline
Affected status: no
Number of individuals with the variant: 82
Comment on evidence:
The study set was not selected for affection status in relation to any cancer. Pathogenicity categories were based on literature curation. See Pubmed ID:22703879 for … (more)
The study set was not selected for affection status in relation to any cancer. Pathogenicity categories were based on literature curation. See Pubmed ID:22703879 for details. (less)
Platform type: High-Throughput DNA Sequencing
Platform name: Illumina GAIIx
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Familial multiple polyposis syndrome |
Department of Pathology and Laboratory Medicine, Sinai Health System
Additional submitter:
Franklin by Genoox
Study: The Canadian Open Genetics Repository (COGR)
Accession: SCV000592707.2 First in ClinVar: Oct 02, 2016 Last updated: Dec 19, 2020 |
Comment:
show
The p.Gln338His variant was not identified in the literature. The p.Gln338 residue is not conserved in mammals and this variant is listed in dbSNP as a common polymorphism in different populations of origin with an average heterozygosity reported as 0.403+/-0.198 (dbSNP#: rs3219489), increasing the likelihood that the variant has no clinical significance. In summary, based on the above information, this variant is classified as benign. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not specified |
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001740567.3 First in ClinVar: Jul 07, 2021 Last updated: Sep 08, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not specified |
Clinical Genetics, Academic Medical Center
Study: VKGL Data-share Consensus
Accession: SCV001922460.1 First in ClinVar: Sep 26, 2021 Last updated: Sep 26, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not specified |
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+
Study: VKGL Data-share Consensus
Accession: SCV001952901.1 First in ClinVar: Oct 02, 2021 Last updated: Oct 02, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(-)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
not specified |
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center
Study: VKGL Data-share Consensus
Accession: SCV001968575.1 First in ClinVar: Oct 08, 2021 Last updated: Oct 08, 2021 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Benign
(Dec 21, 2021)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
Hereditary cancer-predisposing syndrome |
Institute for Biomarker Research, Medical Diagnostic Laboratories, L.L.C.
Accession: SCV002050309.1
First in ClinVar: Jan 08, 2022 Last updated: Jan 08, 2022 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
not provided
(Sep 19, 2013)
N
Not contributing to aggregate classification
|
no classification provided
|
AllHighlyPenetrant |
ITMI
Accession: SCV000085793.1
First in ClinVar: Jun 09, 2014 Last updated: Jun 09, 2014
Comment:
Please see associated publication for description of ethnicities
|
Observation:
7
Observation 1
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: Whole_cohort
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 2
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: African
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 3
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: African_European
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 4
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: Central_Asian
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 5
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: East_Asian
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 6
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: European
Platform type: next-gen sequencing
Platform name: Complete Genomics
Observation 7
Collection method: reference population
Allele origin: germline
Affected status: unknown
Ethnicity/Population group: Hispanic
Platform Type: next-gen sequencing
Platform Name: Complete Genomics
|
|
Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| Meta-analysis of mismatch repair polymorphisms within the cogent consortium for colorectal cancer susceptibility. | Picelli S | PloS one | 2013 | PMID: 24039736 |
| Polymorphisms in base excision repair genes and thyroid cancer risk. | Santos LS | Oncology reports | 2012 | PMID: 22922830 |
| Association between genetic polymorphisms of the base excision repair gene MUTYH and increased colorectal cancer risk in a Japanese population. | Tao H | Cancer science | 2008 | PMID: 18271935 |
| http://www.egl-eurofins.com/emvclass/emvclass.php?approved_symbol=MUTYH | - | - | - | - |
Text-mined citations for rs3219489 ...
HelpRecord last updated Aug 08, 2026
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.
