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NM_005477.3(HCN4):c.3078C>T (p.Ser1026=)

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Interpretation:
Likely benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
2 (Most recent: Sep 25, 2021)
Last evaluated:
Nov 24, 2020
Accession:
VCV000384029.5
Variation ID:
384029
Description:
single nucleotide variant
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NM_005477.3(HCN4):c.3078C>T (p.Ser1026=)

Allele ID
376638
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
15q24.1
Genomic location
15: 73323015 (GRCh38) GRCh38 UCSC
15: 73615356 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000015.10:g.73323015G>A
NC_000015.9:g.73615356G>A
NG_009063.1:g.51250C>T
NM_005477.3:c.3078C>T MANE Select NP_005468.1:p.Ser1026= synonymous
Protein change
-
Other names
-
Canonical SPDI
NC_000015.10:73323014:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
0.00020 (A)

Allele frequency
Exome Aggregation Consortium (ExAC) 0.00008
The Genome Aggregation Database (gnomAD) 0.00003
Trans-Omics for Precision Medicine (TOPMed) 0.00005
1000 Genomes Project 0.00020
Links
ClinGen: CA7648887
dbSNP: rs202188345
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Likely benign 1 criteria provided, single submitter Nov 24, 2020 RCV000471362.4
Likely benign 1 criteria provided, single submitter Oct 22, 2019 RCV001703835.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
HCN4 - - GRCh38
GRCh37
782 816

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Likely benign
(Nov 24, 2020)
criteria provided, single submitter
Method: clinical testing
Brugada syndrome 8
Allele origin: germline
Invitae
Accession: SCV000554501.5
Submitted: (Jan 07, 2021)
Evidence details
Likely benign
(Oct 22, 2019)
criteria provided, single submitter
Method: clinical testing
Not Provided
Allele origin: germline
GeneDx
Accession: SCV000524675.4
Submitted: (Sep 25, 2021)
Evidence details

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs202188345...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Oct 08, 2021