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NM_000441.2(SLC26A4):c.*614C>T

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Interpretation:
Conflicting interpretations of pathogenicity​

Benign(1);Likely benign(1);Uncertain significance(1)

Review status:
criteria provided, conflicting interpretations
Submissions:
3 (Most recent: Sep 14, 2021)
Last evaluated:
May 15, 2021
Accession:
VCV000358510.4
Variation ID:
358510
Description:
single nucleotide variant
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NM_000441.2(SLC26A4):c.*614C>T

Allele ID
304633
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
7q22.3
Genomic location
7: 107716060 (GRCh38) GRCh38 UCSC
7: 107356505 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000007.13:g.107356505C>T
NC_000007.14:g.107716060C>T
NG_008489.1:g.60426C>T
NM_000441.2:c.*614C>T MANE Select 3 prime UTR
Protein change
-
Other names
-
Canonical SPDI
NC_000007.14:107716059:C:T
Functional consequence
-
Global minor allele frequency (GMAF)
0.01218 (T)

Allele frequency
1000 Genomes Project 0.01218
Trans-Omics for Precision Medicine (TOPMed) 0.00768
The Genome Aggregation Database (gnomAD) 0.01240
Links
ClinGen: CA10625020
dbSNP: rs77315223
Varsome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Likely benign 1 criteria provided, single submitter Jan 12, 2018 RCV000287025.2
Uncertain significance 1 criteria provided, single submitter Jan 12, 2018 RCV000325549.2
Benign 1 criteria provided, single submitter May 15, 2021 RCV001653714.2
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
SLC26A4 - - GRCh38
GRCh37
749 825

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Likely benign
(Jan 12, 2018)
criteria provided, single submitter
Method: clinical testing
Pendred syndrome
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000466123.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)
Uncertain significance
(Jan 12, 2018)
criteria provided, single submitter
Method: clinical testing
Deafness, autosomal recessive 4, with enlarged vestibular aqueduct
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000466124.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)
Benign
(May 15, 2021)
criteria provided, single submitter
Method: clinical testing
Not Provided
Allele origin: germline
GeneDx
Accession: SCV001870062.1
Submitted: (Sep 14, 2021)
Evidence details

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs77315223...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Oct 08, 2021