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NM_000094.3(COL7A1):c.89C>T (p.Thr30Ile)

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Interpretation:
Benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
3 (Most recent: Sep 15, 2021)
Last evaluated:
Dec 4, 2020
Accession:
VCV000345891.7
Variation ID:
345891
Description:
single nucleotide variant
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NM_000094.3(COL7A1):c.89C>T (p.Thr30Ile)

Allele ID
291022
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
3p21.31
Genomic location
3: 48594545 (GRCh38) GRCh38 UCSC
3: 48631978 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
LRG_286:g.5708C>T
LRG_286t1:c.89C>T LRG_286p1:p.Thr30Ile
NC_000003.11:g.48631978G>A
... more HGVS
Protein change
T30I
Other names
-
Canonical SPDI
NC_000003.12:48594544:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
0.01418 (A)

Allele frequency
Exome Aggregation Consortium (ExAC) 0.00680
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.01569
The Genome Aggregation Database (gnomAD), exomes 0.00351
1000 Genomes Project 0.01418
Trans-Omics for Precision Medicine (TOPMed) 0.01456
The Genome Aggregation Database (gnomAD) 0.01360
Links
ClinGen: CA2381652
dbSNP: rs74453879
Varsome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Benign 2 criteria provided, multiple submitters, no conflicts Dec 4, 2020 RCV000964915.5
Benign 1 criteria provided, single submitter Jan 13, 2018 RCV000353546.2
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
COL7A1 - - GRCh38
GRCh37
1621 1642

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Benign
(Mar 03, 2015)
criteria provided, single submitter
Method: clinical testing
Not Provided
Allele origin: germline
GeneDx
Accession: SCV001874609.1
Submitted: (Sep 15, 2021)
Evidence details
Benign
(Jan 13, 2018)
criteria provided, single submitter
Method: clinical testing
Dystrophic epidermolysis bullosa
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000445160.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)
Benign
(Dec 04, 2020)
criteria provided, single submitter
Method: clinical testing
not provided
Allele origin: germline
Invitae
Accession: SCV001112164.3
Submitted: (Jan 07, 2021)
Evidence details

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs74453879...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Sep 23, 2021