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NM_144997.7(FLCN):c.*526T>C

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Interpretation:
Benign/Likely benign​

Review status:
criteria provided, single submitter
Submissions:
2 (Most recent: Feb 20, 2020)
Last evaluated:
Jan 12, 2018
Accession:
VCV000322050.2
Variation ID:
322050
Description:
single nucleotide variant
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NM_144997.7(FLCN):c.*526T>C

Allele ID
337309
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
17p11.2
Genomic location
17: 17213129 (GRCh38) GRCh38 UCSC
17: 17116443 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
LRG_325:g.29060T>C
LRG_325t1:c.*526T>C
NC_000017.10:g.17116443A>G
... more HGVS
Protein change
-
Other names
-
Canonical SPDI
NC_000017.11:17213128:A:G
Functional consequence
-
Global minor allele frequency (GMAF)
0.00240 (G)

Allele frequency
The Genome Aggregation Database (gnomAD) 0.00194
1000 Genomes Project 0.00240
Trans-Omics for Precision Medicine (TOPMed) 0.00244
The Genome Aggregation Database (gnomAD) 0.00235
Trans-Omics for Precision Medicine (TOPMed) 0.00218
Links
ClinGen: CA10644964
dbSNP: rs574547835
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Benign 1 criteria provided, single submitter Jan 12, 2018 RCV000333489.2
Likely benign 1 criteria provided, single submitter Jan 12, 2018 RCV000369499.2
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
FLCN Sufficient evidence for dosage pathogenicity No evidence available GRCh38
GRCh37
1159 1275

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Benign
(Jan 12, 2018)
criteria provided, single submitter
Method: clinical testing
Multiple fibrofolliculomas
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000400960.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)
Likely benign
(Jan 12, 2018)
criteria provided, single submitter
Method: clinical testing
Pneumothorax, primary spontaneous
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000400961.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs574547835...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Nov 27, 2021