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NM_001044385.3(TMEM237):c.-12G>A

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Interpretation:
Benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
3 (Most recent: Feb 20, 2020)
Last evaluated:
Jan 12, 2018
Accession:
VCV000257311.2
Variation ID:
257311
Description:
single nucleotide variant
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NM_001044385.3(TMEM237):c.-12G>A

Allele ID
250491
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
2q33.1
Genomic location
2: 201643412 (GRCh38) GRCh38 UCSC
2: 202508135 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000002.11:g.202508135C>T
NC_000002.12:g.201643412C>T
NG_012654.1:g.60283G>A
... more HGVS
Protein change
-
Other names
-
Canonical SPDI
NC_000002.12:201643411:C:T
Functional consequence
-
Global minor allele frequency (GMAF)
0.02436 (T)

Allele frequency
1000 Genomes Project 0.02436
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00471
The Genome Aggregation Database (gnomAD) 0.01362
Trans-Omics for Precision Medicine (TOPMed) 0.01422
The Genome Aggregation Database (gnomAD), exomes 0.01632
Exome Aggregation Consortium (ExAC) 0.02278
Links
ClinGen: CA2056707
dbSNP: rs113186360
Varsome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Benign 2 criteria provided, multiple submitters, no conflicts Apr 29, 2016 RCV000247187.2
Benign 1 criteria provided, single submitter Jan 12, 2018 RCV000323075.2
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
TMEM237 - - GRCh38
GRCh37
265 297

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Benign
(-)
criteria provided, single submitter
Method: clinical testing
NOT SPECIFIED
Allele origin: germline
PreventionGenetics,PreventionGenetics
Accession: SCV000306310.1
Submitted: (Apr 28, 2016)
Evidence details
Benign
(Jan 12, 2018)
criteria provided, single submitter
Method: clinical testing
Joubert syndrome 14
Allele origin: germline
Illumina Clinical Services Laboratory,Illumina
Accession: SCV000426247.3
Submitted: (Feb 20, 2020)
Evidence details
Comment:
This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated … (more)
Benign
(Apr 29, 2016)
criteria provided, single submitter
Method: clinical testing
not specified
Allele origin: germline
GeneDx
Accession: SCV000518566.4
Submitted: (Mar 26, 2018)
Evidence details
Comment:
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs113186360...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Oct 08, 2021