NM_000506.5(F2):c.*97G>A
criteria provided, multiple submitters, no conflicts. Learn more about how ClinVar calculates review status.
Pathogenic (20); Likely pathogenic (1); Pathogenic, low penetrance (1); Established risk allele (1)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NM_000506.5(F2):c.*97G>A
Variation ID: 13310 Accession: VCV000013310.154
- Type and length
-
single nucleotide variant, 1 bp
- Location
-
Cytogenetic: 11p11.2 11: 46739505 (GRCh38) [ NCBI UCSC ] 11: 46761055 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Sep 4, 2016 Jun 20, 2026 Apr 27, 2026 - HGVS
-
... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_000506.5:c.*97G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NC_000011.10:g.46739505G>A NC_000011.9:g.46761055G>A NG_008953.1:g.25313G>A LRG_551:g.25313G>A LRG_551t1:c.*97G>A - Protein change
- -
- Other names
-
F2, 20210G-A
20210G-A
- Canonical SPDI
- NC_000011.10:46739504:G:A
-
Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
-
0.00359 (A)
-
Allele frequency
Help
The frequency of the allele represented by this VCV record.
-
1000 Genomes Project 0.00359
The Genome Aggregation Database (gnomAD) 0.00953
The Genome Aggregation Database (gnomAD) 0.00979
The Genome Aggregation Database (gnomAD), exomes 0.01160
1000 Genomes Project 30x 0.00359
Trans-Omics for Precision Medicine (TOPMed) 0.01047
- Links
-
Genetic Testing Registry (GTR): GTR000219929 Genetic Testing Registry (GTR): GTR000500035 Genetic Testing Registry (GTR): GTR000500321 Genetic Testing Registry (GTR): GTR000512445 Genetic Testing Registry (GTR): GTR000613302 Genetic Testing Registry (GTR): GTR000613613 Genetic Testing Registry (GTR): GTR000614846 Genetic Testing Registry (GTR): GTR000619762 ClinGen: CA325636 Genetic Testing Registry (GTR): GTR000029925 Genetic Testing Registry (GTR): GTR000531360 Genetic Testing Registry (GTR): GTR000556605 Genetic Testing Registry (GTR): GTR000556800 Genetic Testing Registry (GTR): GTR000562197 Genetic Testing Registry (GTR): GTR000569929 OMIM: 176930.0009 dbSNP: rs1799963 VarSome
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| F2 | - | - |
GRCh38 GRCh37 |
472 | 498 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| risk factor (1) |
no assertion criteria provided
|
Jun 17, 2009 | RCV000014238.11 | |
| risk factor (2) |
no assertion criteria provided
|
Jun 17, 2009 | RCV000022729.14 | |
| Pathogenic/Pathogenic, low penetrance (4) |
criteria provided, multiple submitters, no conflicts
|
Feb 3, 2026 | RCV000205022.33 | |
| risk factor (1) |
criteria provided, single submitter
|
Dec 4, 2019 | RCV000826090.12 | |
| Pathogenic/Likely pathogenic (8) |
criteria provided, multiple submitters, no conflicts
|
Apr 27, 2026 | RCV001091960.47 | |
| risk factor (1) |
criteria provided, single submitter
|
Jun 10, 2021 | RCV001794446.8 | |
|
Thrombophilia caused by F2 prothrombin deficiency
|
Established risk allele (1) |
no assertion criteria provided
|
- | RCV002468555.8 |
| Pathogenic (1) |
criteria provided, single submitter
|
Apr 9, 2024 | RCV005042047.1 | |
| Pathogenic (14) |
criteria provided, multiple submitters, no conflicts
|
Nov 18, 2025 | RCV005419865.9 | |
| Established risk allele (1) |
criteria provided, single submitter
|
Dec 8, 2025 | RCV006362020.1 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
Expand all rows
Collapse all rows
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
|
|---|---|---|---|---|---|
|
Pathogenic
(May 28, 2019)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Mendelics
Accession: SCV001138282.1
First in ClinVar: Jan 12, 2020 Last updated: Jan 12, 2020 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
risk factor
(Dec 04, 2019)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Venous thromboembolism |
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
Accession: SCV000967587.2
First in ClinVar: Aug 26, 2019 Last updated: Jul 04, 2020 |
Comment:
show
F2 c.*97G>A (also known as c.20210G>A or G20210A) has been associated with increased risk for venous thromboembolism. This variant has been observed in multiple ethnic backgrounds with highest frequencies in individuals of Latino ancestry (1.8%, Genome Aggregation Database (gnomAD); rs121909293) and is present in ClinVar (ID: 13310). At least two large meta analyses has reported an odds ratio of 3.18-5.18 for developing venous thromboembolism (OR=3.18 [95% CI 2.19-3.46] Gohil 2009, OR=5.38 [95% CI 3.96-8.58] Gonzalez 2016). In vitro functional studies provide some evidence that the c.*97G>A variant may impact protein function (Gehring 2001, Danckwardt 2004). In summary, this variant is not expected to cause highly penetrant Mendelian disease. c.*97G>A variant is an established risk factor for venous thromboembolism. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Number of individuals with the variant: 2
|
|
|
Pathogenic
(Oct 09, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV003844696.2
First in ClinVar: Mar 26, 2023 Last updated: Dec 14, 2024 |
Comment:
show
Variant summary: F2 c.*97G>A (also known as c.20210G>A or G20210A) is located in the untranslated mRNA region downstream of the termination codon. The variant allele was found at a frequency of 0.011 in 1474868 control chromosomes in the gnomAD database (v.4.1 dataset), including 134 homozygotes. Heterozygosity for this variant is associated with increased prothrombin levels (e.g. Gehring_2001, Foy_2009), and several meta-analyses reported 2- to 4-fold increased risk of venous thrombosis, describing this variant as the second most common inherited thrombophilic risk factor (e.g. Kujovich_2006, Ho_2006, Foy_2009, Gonzalez_2016, Shemes_2017, Baylis_2021, Ryu_2024). In addition, homozygous individuals were reported to have an even higher relative risk (OR = 5 (95% CI 2.1-11.92)) for venous thromboembolism (Shemes_2017). At least one publication reports experimental evidence evaluating an impact on protein function and demonstrated that the variant caused increased cleavage site recognition and subsequently increased 3' end processing, mRNA accumulation, and increased protein synthesis (Gehring_2001), which can explain the elevated prothrombin plasma concentrations. The following publications have been ascertained in the context of this evaluation (PMID: 34110897, 19289024, 11443298, 27031503, 16606808, 20301327, 28707429, 38498041). ClinVar contains an entry for this variant (Variation ID: 13310). Based on the evidence outlined above, the variant represents a well-known hypermorphic polymorphism, which causes an increase in normal gene function resulting in an increased risk of thrombophilia, therefore it was classified as a 'low penetrance pathogenic' (i.e. risk) variant. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Apr 09, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect
Ischemic stroke Congenital prothrombin deficiency Pregnancy loss, recurrent, susceptibility to, 2
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases. |
Fulgent Genetics, Fulgent Genetics
Accession: SCV005679007.1
First in ClinVar: Jan 25, 2025 Last updated: Jan 25, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic, low penetrance
(Feb 03, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Congenital prothrombin deficiency |
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000262466.13
First in ClinVar: Jan 31, 2016 Last updated: Feb 15, 2026 |
Comment:
show
This variant occurs in a non-coding region of the F2 gene. It does not change the encoded amino acid sequence of the F2 protein. This variant is present in population databases (rs1799963, gnomAD 1.8%), and has an allele count higher than expected for a pathogenic variant. This sequence change (rs1799963) is a common variant associated with prothrombin-related thrombophilia. It has historically been called prothrombin 20210G>A. As many as 1.7% to 3% of the general U.S. and European populations are heterozygous for this sequence change (PMID: 9569177, 20301327). Heterozygosity for this variant is associated with increased prothrombin levels, and a 2- to 4-fold increased risk of venous thrombosis over the baseline population (PMID: 19289024, 20301327). ClinVar contains an entry for this variant (Variation ID: 13310). For these reasons, this variant has been classified as Pathogenic (low penetrance). (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Aug 02, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein
Accession: SCV003806787.1
First in ClinVar: Mar 04, 2023 Last updated: Mar 04, 2023 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Number of individuals with the variant: 1
Clinical Features:
Right ventricular cardiomyopathy (present) , Pulmonary arterial hypertension (present) , Peripheral thrombosis (present) , Thromboembolism (present)
Geographic origin: Brazil
Method: Paired-end whole-genome sequencing
|
|
|
Pathogenic
(Nov 10, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Clinical Genetics Laboratory, Skane University Hospital Lund
Accession: SCV005197847.1
First in ClinVar: Aug 25, 2024 Last updated: Aug 25, 2024 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Oct 04, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Dubai Health Genomic Medicine Center, Dubai Health
Accession: SCV005420901.1
First in ClinVar: Dec 07, 2024 Last updated: Dec 07, 2024 |
Observation: 1
Collection method: research
Allele origin: germline
Affected status: yes
Observation 1
Collection method: research
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Mar 04, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital
Accession: SCV005090891.2
First in ClinVar: Aug 04, 2024 Last updated: Mar 11, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Mar 18, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect
(Autosomal recessive inheritance)
|
First Genomix Gene Laboratory, Genetic Diagnostics Department
Accession: SCV007580933.1
First in ClinVar: May 03, 2026 Last updated: May 03, 2026 |
Comment:
show
As part of Carrier Screening testing performed at First Genomix, this variant was identified in a heterozygous state in a patient who is not affected with this condition. (less)
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: no
Number of individuals with the variant: 1
|
|
|
risk factor
(Jun 10, 2021)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Cerebral palsy |
Neurogenetics Research Program, University of Adelaide
Accession: SCV001737608.1
First in ClinVar: Dec 18, 2021 Last updated: Dec 18, 2021 |
Comment:
show
Heterozygosity for F2 c.*97G>A (G20210A, rs1799963) is the second most common genetic risk factor for venous thrombosis (less)
Observation:
2
Observation 1
Collection method: research
Allele origin: unknown
Affected status: yes
Number of individuals with the variant: 1
Clinical Features:
Spastic diplegia (present)
Observation 2
Collection method: research
Allele origin: unknown
Affected status: yes
Number of individuals with the variant: 1
Clinical Features:
Spastic diplegia (present) , Dystonic disorder (present) , Seizure (present)
|
|
|
Pathogenic
(-)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology
Accession: SCV002500854.1
First in ClinVar: Apr 23, 2022 Last updated: Apr 23, 2022
Comment:
GoldVariant submitter: Dr Karyn Mégy NIHR Bioresource - Cambridge University, UK
|
Observation:
6
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform type: NGS gene panel
Observation 2
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform type: NGS gene panel
Observation 3
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform type: NGS gene panel
Observation 4
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform type: NGS gene panel
Observation 5
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform type: NGS gene panel
Observation 6
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Zygosity: 1 Single Heterozygote
Platform Type: NGS gene panel
|
|
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Pathogenic
(Sep 28, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Illumina Laboratory Services, Illumina
Accession: SCV001262797.2
First in ClinVar: May 31, 2020 Last updated: Feb 18, 2023 |
Comment:
show
The F2 c.*97G>A variant, previously known as prothrombin 20210G>A or G20210A, occurs in the 3' untranslated region of the F2 gene and results in the substitution of a guanine at nucleotide position c.*97 with an adenine. The c.*97G>A variant is a well-documented variant associated with an increased risk of venous thromboembolism (VTE). Across a selection of the available literature, heterozygosity for the c.*97G>A variant has been estimated to confer an increased risk of VTE between 1.9 to 11.5 fold, with the majority of estimates falling between 2 and 5 fold. Homozygosity for this variant is presumed to confer a higher risk of VTE, however the magnitude of this risk is not well defined (PMID: 20301327; PMID: 30297698). Data from a 2009 meta-analysis indicated that while heterozygosity for the c.*97G>A variant confers an increased risk for initial VTE, it was not predictive of recurrent events (PMID: 19531787). The highest frequency of this allele in the Genome Aggregation Database is 0.03165 in the Middle Eastern population (version 3.1.2). This frequency is high but is consistent with disease prevalence estimates and incomplete penetrance among variant carriers. Functional studies indicate that the c.*97G>A variant enhances 3' end processing of pre-mRNA, which results in increased mRNA production and elevated prothrombin levels (PMID: 8916933; PMID: 15059842). Based on the collective evidence, the c.*97G>A variant is classified as pathogenic with reduced penetrance for thrombophilia due to thrombin defect. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
|
|
|
Pathogenic
(May 13, 2022)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
GeneDx
Accession: SCV001822471.3
First in ClinVar: Sep 08, 2021 Last updated: Mar 04, 2023 |
Comment:
show
Also known as 20210G>A and G20210A due to alternate nomenclature; Published functional studies demonstrate elevated plasma levels of prothrombin (Danckwardt et al., 2004); This variant is associated with the following publications: (PMID: 22909823, 26732783, 29431110, 25528068, 26422681, 25772935, 15059842, 22021457, 19356951, 22023246, 20723024, 24619398, 11583312, 8916933, 25977387, 22141575, 27031503, 19652888, 15726653, 28707429, 22023244, 31472339, 25028703, 32155011, 26148378, 24016568, 25693916, 29974397, 30005273, 26226452, 34570182, 16411414, 9238178, 11684865, 10456622, 25509247, 11864707, 10507841, 33258288, 11737249, 11064483, 10406905, 11190909, 11114826) (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Jul 27, 2023)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Baylor Genetics
Accession: SCV004040661.1
First in ClinVar: Oct 07, 2023 Last updated: Oct 07, 2023 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
Pathogenic
(Jul 20, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Congenital prothrombin deficiency |
Genomic Research Center, Shahid Beheshti University of Medical Sciences
Accession: SCV001251846.2
First in ClinVar: May 31, 2020 Last updated: Jul 29, 2024 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
|
|
|
Likely pathogenic
(Aug 23, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Centre for Clinical Genetics and Genomic Diagnostics, Zealand University Hospital
Accession: SCV005328465.1
First in ClinVar: Oct 08, 2024 Last updated: Oct 08, 2024 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Feb 16, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Laboratory of Genetics, Children's Clinical University Hospital Latvia
Accession: SCV006109805.1
First in ClinVar: Jul 05, 2025 Last updated: Jul 05, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(May 27, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Department of Paediatrics at Addenbrookes, Cambridge University Hospitals NHS Foundation Trust (UK)
Accession: SCV006555160.1
First in ClinVar: Oct 12, 2025 Last updated: Oct 12, 2025 |
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
|
|
|
Pathogenic
(Sep 10, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
Accession: SCV003921890.4
First in ClinVar: May 06, 2023 Last updated: Dec 01, 2025 |
Comment:
show
This variant is classified as Pathogenic. Evidence in support of pathogenic classification: Non-coding variant with known effect. The c.*97G>A variant results in gain-of-function with elevated protein synthesis (PMID: 11443298); This variant has strong previous evidence of pathogenicity in unrelated individuals. This variant has been reported multiple times as pathogenic for venous thromboembolism and as a risk factor for both stroke and recurrent pregnancy loss (ClinVar; PMID: 30297698). A review study showed this variant is more prevalent in affected Italian, Brazilian and German individuals (PMID: 27031503). Evidence in support of benign classification: Variant is present in gnomAD >=0.01 for a dominant condition (v4: 16,578 heterozygote(s), 136 homozygote(s)); Same nucleotide change has been observed in placental mammals. Additional information: This variant is heterozygous; This gene is associated with both recessive and dominant disease. However, this variant is described to be semi-dominant as both homozygous and heterozygous individuals are at increased risk for venous thromboembolism, with homozygotes having a greater risk (OMIM, PMID: 30297698); Gain of function is a known mechanism of disease in this gene and is associated with thrombophilia due to a thrombin defect (MIM#188050) (OMIM); The condition associated with this gene has incomplete penetrance (PMID: 30297698); This variant has been shown to be paternally inherited by trio analysis. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Established risk allele
(Dec 08, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Inborn genetic diseases |
Ambry Genetics
Accession: SCV007223184.1
First in ClinVar: Jan 11, 2026 Last updated: Jan 11, 2026 |
Comment:
show
The c.*97G>A alteration is located in the 3' untranslated region (3'UTR) of the F2 gene. This alteration consists of a G to A substitution 97 nucleotides after the termination codon of the F2 gene. Based on data from gnomAD, the A allele has an overall frequency of 0.844% (265/31396) total alleles studied. The highest observed frequency was 1.769% (15/848) of Latino alleles. This variant was identified in one or more individuals with features consistent with thrombophilia, including increased pro-thrombin activity, and segregated with disease in at least one family (Soria, 2000; Simioni, 1998; Poort, 1996). The overall increase in risk for thrombosis is roughly 2-5 fold in heterozygotes and 3-5 fold in homozygotes, although this varies among studies (Gohil, 2009; Gonzalez, 2016; Ryu, 2024; Alnor, 2024; Kang, 2025). For example, a recent meta-analysis found an increase in risk of 2.21 (95% CI 1.70–2.87) for heterozygotes and 5.16 (95% CI 3.12–8.52) for homozygotes (Alnor, 2024). However, the penetrance of thrombotic events is incomplete, even in homozygotes (Soria, 2000; Shemesh, 2017). Therefore, the presence of this variant cannot predict the occurrence or recurrence of a thrombotic event in a specific individual (Kang, 2025). This nucleotide position is not well conserved in available vertebrate species. In multiple assays testing F2 function, this variant showed functionally abnormal results (Danckwardt, 2004; Gehring, 2001). Based on the available evidence, this alteration is classified as pathogenic for autosomal dominant prothrombin thrombophilia; however, it is unlikely to be causative of autosomal recessive congenital prothrombin deficiency. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(Mar 27, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect
(Autosomal dominant inheritance)
|
Variantyx, Inc.
Accession: SCV007294372.1
First in ClinVar: Jan 17, 2026 Last updated: Jan 17, 2026 |
Comment:
show
This is a heterozygous variant in the 3-prime untranslated region of the F2 gene (OMIM: 176930). This variant, also known as 20210G>A, is a common pathogenic risk factor for venous thromboembolism. The frequency of this variant in affected individuals is significantly increased compared to controls, and heterozygosity for this variant is associated with increased prothrombin levels and a 2 to 5-fold increased risk of venous thrombosis (PMID: 27031503, 19652888) (PS4). Functional studies have shown that this variant alters F2 protein function (PMID: 11443298, 12038788, 14717975, 20553951) (PS3). This variant has a 1.2897% maximum allele frequency in non-founder control populations (https://gnomad.broadinstitute.org/). Based on the current evidence, this variant is classified as pathogenic with reduced penetrance for autosomal dominant thrombophilia 1 due to thrombin defect. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
|
|
|
Pathogenic
(Apr 27, 2026)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
Dasa
Accession: SCV007599052.1
First in ClinVar: May 30, 2026 Last updated: May 30, 2026 |
Comment:
show
NM_000506.5(F2):c.*97G>A is a sequence variant. This variant has been recurrently observed in individuals with related phenotype (PMID: 11443298; PMID: 19289024; PMID: 16606808; PMID: 27031503; PMID: 28707429). The variant is present at low frequency in population datasets. Based on the available data, this variant is classified as pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: unknown
|
|
|
Pathogenic
(May 01, 2024)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
not provided |
CeGaT Center for Human Genetics Tuebingen
Accession: SCV001248265.36
First in ClinVar: May 12, 2020 Last updated: Jun 20, 2026 |
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Number of individuals with the variant: 54
|
|
|
Pathogenic
(Nov 18, 2025)
C
Contributing to aggregate classification
|
criteria provided, single submitter
|
Thrombophilia due to thrombin defect |
3billion
Accession: SCV006583511.2
First in ClinVar: Oct 25, 2025 Last updated: Jun 20, 2026 |
Comment:
show
The variant is observed in the gnomAD v4.1.0 dataset (total allele frequency: 1.138%). Predicted Consequence/Location: 3' UTR variant Functional studies provide strong evidence of the variant having a damaging effect on the gene or gene product (PMID: 15059842, 8916933). The variant has been reported at least twice as pathogenic with clinical assertions and evidence for the classification (ClinVar ID: VCV000013310 /3billion dataset). Therefore, this variant is classified as Pathogenic according to the recommendation of ACMG/AMP guideline. (less)
Observation: 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: germline
Affected status: yes
Platform type: exome sequencing
|
|
|
Pathogenic
(Jun 17, 2009)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
THROMBOPHILIA DUE TO THROMBIN DEFECT |
OMIM
Accession: SCV000034485.3
First in ClinVar: May 03, 2013 Last updated: Jun 04, 2018 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Comment on evidence:
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of … (more)
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of the 20210A mutation were found, yielding an overall prevalence of 2.0%. In southern Europe, the prevalence was 3.0%, nearly twice as high as the prevalence in northern Europe (1.7%). The prothrombin variant appeared to be rare in individuals of Asian and African descent. To discern whether the 20210G-A polymorphism originated from a single or recurrent mutation event, Zivelin et al. (1998) determined allele frequencies of 4 dimorphisms spanning 16 of 21 kb of the factor II gene in 133 unrelated Caucasian subjects of Jewish, Austrian, and French origins who bore factor II 20210A (10 homozygotes and 123 heterozygotes) and 110 Caucasian controls. Remarkable differences in the allele frequencies for each dimorphism were observed between the study groups (p = 0.0007 or less), indicating strong linkage disequilibrium and suggesting a founder effect. Indeed, a founder haplotype was present in 68% of 20210A mutant alleles and in only 34% of 20210G normal alleles (p less than 0.0001). These data strongly supported a single origin for the factor II polymorphism. Because the polymorphism is rare or absent in non-Caucasian populations, it probably occurred after divergence of Africans from non-Africans and of Caucasoids from Mongoloid subpopulations. Rees et al. (1999) analyzed samples from 22 different non-European countries and found that the prothrombin 20210G-A variant, like factor V Leiden (612309.0001), is rare outside Europe. Of 1,811 non-Europeans tested, they found only 1 individual, in India, who had the mutation in heterozygous state. Zivelin et al. (2006) analyzed the frequencies of 5 SNPs and 9 microsatellites flanking the prothrombin gene in 88 homozygotes for 20210A and 66 homozygotes for 20210G. For estimating the age of the prothrombin 20210G-A mutation, they analyzed linkage disequilibrium between the mutation and the multiple markers that had been assessed. The analysis yielded an age estimate of 23,720 years. A similar analysis was performed for factor V Leiden (612309.0001) yielding an age estimate of 21,340 years. The occurrence of the 2 mutations in whites toward the end of the last glaciation and their presently wide distribution in whites suggested selective evolutionary advantages for which some evidence was reported (diminished blood loss) or is controversial (protection against infections). The selected disadvantage from thrombosis is unlikely because until recent centuries humans did not live long enough to manifest a meaningful incidence of thrombosis. Thrombophilia Poort et al. (1996) found that a common genetic 20210G-A transition in the 3-prime untranslated region of the prothrombin gene (Degen and Davie, 1987) was associated with elevated plasma prothrombin levels and an increased risk of venous thrombosis (THPH1; 188050). The SNP was found in 18% of probands of families with thrombosis, 6% of unselected consecutive patients with deep vein thrombosis, and 2% of healthy controls. Rosendaal et al. (1997) found that the mutation was associated with a 4-fold increased risk of myocardial infarction in women, while among men the risk was increased 1.5-fold (Doggen et al., 1998). Franco et al. (1999) found a frequency of the 20210A allele of 1% in a 400-member healthy control population and 2.7% in 263 patients with proven premature atherosclerotic disease. All heterozygotes in the patient group were found to have had a myocardial infarction. In addition, the data provided evidence for an association of the mutation with excessive thrombin generation, which may contribute to the understanding of its role in venous and arterial disease. Chamouard et al. (1999) studied the frequency of the factor II 20210G-A mutation in 10 white European patients with idiopathic portal vein thrombosis. They studied 5 women and 5 men; mean age was 50.4 years. The frequency of the 20210G-A mutation was found to be 40% in idiopathic portal vein thrombosis compared with 4.8% in controls or patients with nonidiopathic portal vein thrombosis or deep vein thrombosis. The frequency of the factor V Leiden mutation (612309.0001) was similar in subjects with portal vein thrombosis and in controls but was increased in patients with deep vein thrombosis. De Stefano et al. (1999) found that patients who were heterozygous for both factor V Leiden (1691G-A; 612309.0001) and prothrombin 20210G-A had a 2.6-fold higher risk of recurrent thrombosis than did carriers of factor V Leiden alone. Patients who were heterozygous for factor V Leiden had a risk of recurrent deep venous thrombosis that was similar to that among patients who had no known mutations in either factor II or factor V. In a Spanish family, Corral et al. (1999) identified 3 subjects homozygous for the 20210A prothrombin mutation who additionally were heterozygous for factor V Leiden. The combination of the 2 mutations increased the risk of developing venous thrombotic episodes at an earlier age. However, even in association with factor V Leiden, the homozygous condition of the 20210A prothrombin mutation required additional risk factors to induce a thrombotic event. Humpert et al. (1999) screened 384 type 1 diabetic patients for the 20210G-A prothrombin polymorphism and detected the variant in 9 patients. There was no increase in the incidence of coronary heart disease, nephropathy, or retinopathy among diabetic patients carrying the 20210G-A polymorphism. Meyer et al. (1999) described a method for simultaneously genotyping for factor V Leiden and the prothrombin 20210G-A variant by a multiplex PCR-SSCP assay on whole blood. Prohaska et al. (1999) studied 284 patients with angiographically confirmed coronary artery disease for the presence of the 20210G-A polymorphism of the prothrombin gene and compared them with 340 healthy controls. The prevalence of the mutation was similar in both groups. There was a mild increase in the frequency of the mutation in a group of 294 venous thrombosis patients compared with the healthy controls (odds ratio, 2.90; 95% CI, 1.25-6.9). One of the main factors of sudden hearing impairment, vestibular disturbance (tinnitus), is generally thought to be an acute labyrinthine ischemia; the most common mechanism of sudden hearing loss appears to be impaired cochlear blood circulation. Mercier et al. (1999) provided evidence that the 20210A allele of the prothrombin gene is a risk factor for perception deafness. Among 368 patients (median age, 41 years) with spontaneous deep vein thrombosis, 18 (12 women and 6 men, 38 to 69 years of age) had also suffered from acute unilateral hearing impairment. Six of the 18 were heterozygous for the 20210A allele. In a group of 395 nonthrombotic consecutive patients studied in the same laboratory for hemorrhagic symptoms or thrombocytopenia over the same period of time, 4 had acute unilateral perception deafness; of 395 nonthrombotic and nonhemorrhagic sex- and age-matched controls, 6 had acute unilateral perception deafness. Souto et al. (1999) reported a family illustrating the complexity of thrombotic disease in relation to the 20210A variant. The pedigree was ascertained through a proband with idiopathic thrombophilia. The family members who had a history of thromboembolism were heterozygous carriers of the 20210A variant. In addition, 4 relatives who were heterozygous as well as 2 who were homozygous for the 20210A allele failed to show clinical manifestations. The 2 homozygotes were 51 and 19 years old. Gehring et al. (2001) demonstrated that the 20210G-A mutation does not affect the amount of pre-mRNA, the site of 3-prime end cleavage, or the length of poly(A) tail of the mature mRNA. Rather, Gehring et al. (2001) demonstrated that the physiologic F2 3-prime end cleavage signal is inefficient and that F2 20210G-A represents a gain-of-function mutation, causing increased cleavage site recognition, increased 3-prime end processing, and increased mRNA accumulation and protein synthesis. Enhanced mRNA 3-prime end formation efficiency emerges as a novel principle causing a genetic disorder and explains the role of the F2 20210G-A mutation in the pathogenesis of thrombophilia. Gehring et al. (2001) concluded that their work illustrates the pathophysiologic importance of quantitatively minor aberrations of RNA metabolism. Although the 20210G-A mutation in heterozygous state carries an increased risk of a first venous thromboembolic episode, De Stefano et al. (2001) found that the risk of spontaneous recurrent venous thromboembolism was similar to that in patients with normal genotype. They concluded that carriers of the prothrombin mutation should be treated with oral anticoagulants after a first deep venous thrombosis for a similar length of time as patients with a normal genotype. Laczika et al. (2002) described a 19-year-old woman with the joint occurrence of type I antithrombin III deficiency (613118) and a heterozygous prothrombin 20210G-A mutation, who developed chronic thromboembolic pulmonary hypertension on the basis of total occlusion of the right pulmonary artery. Pulmonary vascular patency was restored successfully by surgical pulmonary thromboendarterectomy performed 24 weeks after the initial clinical presentation. Segal et al. (2009) provided a metaanalysis of the predictive value of the prothrombin 20210G-A mutation for venous thromboembolism using a literature review of 10 relevant articles. Although heterozygosity for prothrombin 20210G-A in probands conferred a risk of 1.45, the confidence interval ranged from 0.96 to 2.2, suggesting that the mutation was not predictive of recurrent venous thromboembolism compared to those without the mutation. In addition, there was insufficient evidence regarding the predictive value of homozygosity for prothrombin 20210G-A in probands, and for the predictive value of being a mutation carrier in relatives of probands with the mutation. It remained unknown whether testing improved clinical outcomes. Segal et al. (2009) concluded that there is insufficient evidence to support the hypothesis that 20210G-A confers a significantly increased risk for venous thromboembolism in terms of genetic testing. Ischemic Stroke In a comprehensive metaanalysis of 19 case-control studies including 3,028 white adult patients, Casas et al. (2004) found a statistically significant association between ischemic stroke (601367) and the 20210G-A substitution (odds ratio of 1.44). Budd-Chiari Syndrome In a 37-year-old Caucasian male with polycythemia vera who had developed Budd-Chiari syndrome (BDCHS; 600880), Bucciarelli et al. (1998) identified heterozygosity for the 20210G-A substitution. His paternal grandmother had died at the age of 60 due to BDCHS, and his father, who was also heterozygous for the mutation, had had a myocardial infarction at age 55. Bucciarelli et al. (1998) excluded deficiencies of antithrombin, protein C, and protein S, as well as the presence of antiphospholipid syndrome and the factor V Leiden mutation. They suggested case-control studies to establish if carriers of the 20210G-A mutation have an increased risk of developing BDCHS. Oner et al. (1999) described Budd-Chiari syndrome in a patient heterozygous for both the 20210G-A mutation of F2 and the factor V Leiden mutation; heterozygosity for the factor V Leiden mutation is a known susceptibility factor for BDCHS. Oner et al. (1999) referred to the 20210G-A mutation by the abbreviation PM, presumably for 'prothrombin mutation.' Susceptibility to Recurrent Pregnancy Loss Pihusch et al. (2001) studied clotting factors in 102 patients with 2 or more consecutive spontaneous abortions (RPRGL2; 614390) compared to 128 women without miscarriage and found that heterozygosity for the 20210G-A mutation of prothrombin was more common in patients with abortions in the first trimester (p = 0.027; odds ratio, 8.5). (less)
|
|
|
risk factor
(Jun 17, 2009)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
STROKE, ISCHEMIC, SUSCEPTIBILITY TO |
OMIM
Accession: SCV000034486.3
First in ClinVar: Apr 04, 2013 Last updated: Jun 04, 2018 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Comment on evidence:
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of … (more)
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of the 20210A mutation were found, yielding an overall prevalence of 2.0%. In southern Europe, the prevalence was 3.0%, nearly twice as high as the prevalence in northern Europe (1.7%). The prothrombin variant appeared to be rare in individuals of Asian and African descent. To discern whether the 20210G-A polymorphism originated from a single or recurrent mutation event, Zivelin et al. (1998) determined allele frequencies of 4 dimorphisms spanning 16 of 21 kb of the factor II gene in 133 unrelated Caucasian subjects of Jewish, Austrian, and French origins who bore factor II 20210A (10 homozygotes and 123 heterozygotes) and 110 Caucasian controls. Remarkable differences in the allele frequencies for each dimorphism were observed between the study groups (p = 0.0007 or less), indicating strong linkage disequilibrium and suggesting a founder effect. Indeed, a founder haplotype was present in 68% of 20210A mutant alleles and in only 34% of 20210G normal alleles (p less than 0.0001). These data strongly supported a single origin for the factor II polymorphism. Because the polymorphism is rare or absent in non-Caucasian populations, it probably occurred after divergence of Africans from non-Africans and of Caucasoids from Mongoloid subpopulations. Rees et al. (1999) analyzed samples from 22 different non-European countries and found that the prothrombin 20210G-A variant, like factor V Leiden (612309.0001), is rare outside Europe. Of 1,811 non-Europeans tested, they found only 1 individual, in India, who had the mutation in heterozygous state. Zivelin et al. (2006) analyzed the frequencies of 5 SNPs and 9 microsatellites flanking the prothrombin gene in 88 homozygotes for 20210A and 66 homozygotes for 20210G. For estimating the age of the prothrombin 20210G-A mutation, they analyzed linkage disequilibrium between the mutation and the multiple markers that had been assessed. The analysis yielded an age estimate of 23,720 years. A similar analysis was performed for factor V Leiden (612309.0001) yielding an age estimate of 21,340 years. The occurrence of the 2 mutations in whites toward the end of the last glaciation and their presently wide distribution in whites suggested selective evolutionary advantages for which some evidence was reported (diminished blood loss) or is controversial (protection against infections). The selected disadvantage from thrombosis is unlikely because until recent centuries humans did not live long enough to manifest a meaningful incidence of thrombosis. Thrombophilia Poort et al. (1996) found that a common genetic 20210G-A transition in the 3-prime untranslated region of the prothrombin gene (Degen and Davie, 1987) was associated with elevated plasma prothrombin levels and an increased risk of venous thrombosis (THPH1; 188050). The SNP was found in 18% of probands of families with thrombosis, 6% of unselected consecutive patients with deep vein thrombosis, and 2% of healthy controls. Rosendaal et al. (1997) found that the mutation was associated with a 4-fold increased risk of myocardial infarction in women, while among men the risk was increased 1.5-fold (Doggen et al., 1998). Franco et al. (1999) found a frequency of the 20210A allele of 1% in a 400-member healthy control population and 2.7% in 263 patients with proven premature atherosclerotic disease. All heterozygotes in the patient group were found to have had a myocardial infarction. In addition, the data provided evidence for an association of the mutation with excessive thrombin generation, which may contribute to the understanding of its role in venous and arterial disease. Chamouard et al. (1999) studied the frequency of the factor II 20210G-A mutation in 10 white European patients with idiopathic portal vein thrombosis. They studied 5 women and 5 men; mean age was 50.4 years. The frequency of the 20210G-A mutation was found to be 40% in idiopathic portal vein thrombosis compared with 4.8% in controls or patients with nonidiopathic portal vein thrombosis or deep vein thrombosis. The frequency of the factor V Leiden mutation (612309.0001) was similar in subjects with portal vein thrombosis and in controls but was increased in patients with deep vein thrombosis. De Stefano et al. (1999) found that patients who were heterozygous for both factor V Leiden (1691G-A; 612309.0001) and prothrombin 20210G-A had a 2.6-fold higher risk of recurrent thrombosis than did carriers of factor V Leiden alone. Patients who were heterozygous for factor V Leiden had a risk of recurrent deep venous thrombosis that was similar to that among patients who had no known mutations in either factor II or factor V. In a Spanish family, Corral et al. (1999) identified 3 subjects homozygous for the 20210A prothrombin mutation who additionally were heterozygous for factor V Leiden. The combination of the 2 mutations increased the risk of developing venous thrombotic episodes at an earlier age. However, even in association with factor V Leiden, the homozygous condition of the 20210A prothrombin mutation required additional risk factors to induce a thrombotic event. Humpert et al. (1999) screened 384 type 1 diabetic patients for the 20210G-A prothrombin polymorphism and detected the variant in 9 patients. There was no increase in the incidence of coronary heart disease, nephropathy, or retinopathy among diabetic patients carrying the 20210G-A polymorphism. Meyer et al. (1999) described a method for simultaneously genotyping for factor V Leiden and the prothrombin 20210G-A variant by a multiplex PCR-SSCP assay on whole blood. Prohaska et al. (1999) studied 284 patients with angiographically confirmed coronary artery disease for the presence of the 20210G-A polymorphism of the prothrombin gene and compared them with 340 healthy controls. The prevalence of the mutation was similar in both groups. There was a mild increase in the frequency of the mutation in a group of 294 venous thrombosis patients compared with the healthy controls (odds ratio, 2.90; 95% CI, 1.25-6.9). One of the main factors of sudden hearing impairment, vestibular disturbance (tinnitus), is generally thought to be an acute labyrinthine ischemia; the most common mechanism of sudden hearing loss appears to be impaired cochlear blood circulation. Mercier et al. (1999) provided evidence that the 20210A allele of the prothrombin gene is a risk factor for perception deafness. Among 368 patients (median age, 41 years) with spontaneous deep vein thrombosis, 18 (12 women and 6 men, 38 to 69 years of age) had also suffered from acute unilateral hearing impairment. Six of the 18 were heterozygous for the 20210A allele. In a group of 395 nonthrombotic consecutive patients studied in the same laboratory for hemorrhagic symptoms or thrombocytopenia over the same period of time, 4 had acute unilateral perception deafness; of 395 nonthrombotic and nonhemorrhagic sex- and age-matched controls, 6 had acute unilateral perception deafness. Souto et al. (1999) reported a family illustrating the complexity of thrombotic disease in relation to the 20210A variant. The pedigree was ascertained through a proband with idiopathic thrombophilia. The family members who had a history of thromboembolism were heterozygous carriers of the 20210A variant. In addition, 4 relatives who were heterozygous as well as 2 who were homozygous for the 20210A allele failed to show clinical manifestations. The 2 homozygotes were 51 and 19 years old. Gehring et al. (2001) demonstrated that the 20210G-A mutation does not affect the amount of pre-mRNA, the site of 3-prime end cleavage, or the length of poly(A) tail of the mature mRNA. Rather, Gehring et al. (2001) demonstrated that the physiologic F2 3-prime end cleavage signal is inefficient and that F2 20210G-A represents a gain-of-function mutation, causing increased cleavage site recognition, increased 3-prime end processing, and increased mRNA accumulation and protein synthesis. Enhanced mRNA 3-prime end formation efficiency emerges as a novel principle causing a genetic disorder and explains the role of the F2 20210G-A mutation in the pathogenesis of thrombophilia. Gehring et al. (2001) concluded that their work illustrates the pathophysiologic importance of quantitatively minor aberrations of RNA metabolism. Although the 20210G-A mutation in heterozygous state carries an increased risk of a first venous thromboembolic episode, De Stefano et al. (2001) found that the risk of spontaneous recurrent venous thromboembolism was similar to that in patients with normal genotype. They concluded that carriers of the prothrombin mutation should be treated with oral anticoagulants after a first deep venous thrombosis for a similar length of time as patients with a normal genotype. Laczika et al. (2002) described a 19-year-old woman with the joint occurrence of type I antithrombin III deficiency (613118) and a heterozygous prothrombin 20210G-A mutation, who developed chronic thromboembolic pulmonary hypertension on the basis of total occlusion of the right pulmonary artery. Pulmonary vascular patency was restored successfully by surgical pulmonary thromboendarterectomy performed 24 weeks after the initial clinical presentation. Segal et al. (2009) provided a metaanalysis of the predictive value of the prothrombin 20210G-A mutation for venous thromboembolism using a literature review of 10 relevant articles. Although heterozygosity for prothrombin 20210G-A in probands conferred a risk of 1.45, the confidence interval ranged from 0.96 to 2.2, suggesting that the mutation was not predictive of recurrent venous thromboembolism compared to those without the mutation. In addition, there was insufficient evidence regarding the predictive value of homozygosity for prothrombin 20210G-A in probands, and for the predictive value of being a mutation carrier in relatives of probands with the mutation. It remained unknown whether testing improved clinical outcomes. Segal et al. (2009) concluded that there is insufficient evidence to support the hypothesis that 20210G-A confers a significantly increased risk for venous thromboembolism in terms of genetic testing. Ischemic Stroke In a comprehensive metaanalysis of 19 case-control studies including 3,028 white adult patients, Casas et al. (2004) found a statistically significant association between ischemic stroke (601367) and the 20210G-A substitution (odds ratio of 1.44). Budd-Chiari Syndrome In a 37-year-old Caucasian male with polycythemia vera who had developed Budd-Chiari syndrome (BDCHS; 600880), Bucciarelli et al. (1998) identified heterozygosity for the 20210G-A substitution. His paternal grandmother had died at the age of 60 due to BDCHS, and his father, who was also heterozygous for the mutation, had had a myocardial infarction at age 55. Bucciarelli et al. (1998) excluded deficiencies of antithrombin, protein C, and protein S, as well as the presence of antiphospholipid syndrome and the factor V Leiden mutation. They suggested case-control studies to establish if carriers of the 20210G-A mutation have an increased risk of developing BDCHS. Oner et al. (1999) described Budd-Chiari syndrome in a patient heterozygous for both the 20210G-A mutation of F2 and the factor V Leiden mutation; heterozygosity for the factor V Leiden mutation is a known susceptibility factor for BDCHS. Oner et al. (1999) referred to the 20210G-A mutation by the abbreviation PM, presumably for 'prothrombin mutation.' Susceptibility to Recurrent Pregnancy Loss Pihusch et al. (2001) studied clotting factors in 102 patients with 2 or more consecutive spontaneous abortions (RPRGL2; 614390) compared to 128 women without miscarriage and found that heterozygosity for the 20210G-A mutation of prothrombin was more common in patients with abortions in the first trimester (p = 0.027; odds ratio, 8.5). (less)
|
|
|
risk factor
(Jun 17, 2009)
N
Not contributing to aggregate classification
|
no assertion criteria provided
|
PREGNANCY LOSS, RECURRENT, SUSCEPTIBILITY TO, 2 |
OMIM
Accession: SCV000044018.3
First in ClinVar: Apr 04, 2013 Last updated: Jun 04, 2018 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: not provided
Comment on evidence:
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of … (more)
Rosendaal et al. (1998) presented data from 11 centers and 9 countries, representing a total of 5,527 tested individuals. Among these, 111 heterozygous carriers of the 20210A mutation were found, yielding an overall prevalence of 2.0%. In southern Europe, the prevalence was 3.0%, nearly twice as high as the prevalence in northern Europe (1.7%). The prothrombin variant appeared to be rare in individuals of Asian and African descent. To discern whether the 20210G-A polymorphism originated from a single or recurrent mutation event, Zivelin et al. (1998) determined allele frequencies of 4 dimorphisms spanning 16 of 21 kb of the factor II gene in 133 unrelated Caucasian subjects of Jewish, Austrian, and French origins who bore factor II 20210A (10 homozygotes and 123 heterozygotes) and 110 Caucasian controls. Remarkable differences in the allele frequencies for each dimorphism were observed between the study groups (p = 0.0007 or less), indicating strong linkage disequilibrium and suggesting a founder effect. Indeed, a founder haplotype was present in 68% of 20210A mutant alleles and in only 34% of 20210G normal alleles (p less than 0.0001). These data strongly supported a single origin for the factor II polymorphism. Because the polymorphism is rare or absent in non-Caucasian populations, it probably occurred after divergence of Africans from non-Africans and of Caucasoids from Mongoloid subpopulations. Rees et al. (1999) analyzed samples from 22 different non-European countries and found that the prothrombin 20210G-A variant, like factor V Leiden (612309.0001), is rare outside Europe. Of 1,811 non-Europeans tested, they found only 1 individual, in India, who had the mutation in heterozygous state. Zivelin et al. (2006) analyzed the frequencies of 5 SNPs and 9 microsatellites flanking the prothrombin gene in 88 homozygotes for 20210A and 66 homozygotes for 20210G. For estimating the age of the prothrombin 20210G-A mutation, they analyzed linkage disequilibrium between the mutation and the multiple markers that had been assessed. The analysis yielded an age estimate of 23,720 years. A similar analysis was performed for factor V Leiden (612309.0001) yielding an age estimate of 21,340 years. The occurrence of the 2 mutations in whites toward the end of the last glaciation and their presently wide distribution in whites suggested selective evolutionary advantages for which some evidence was reported (diminished blood loss) or is controversial (protection against infections). The selected disadvantage from thrombosis is unlikely because until recent centuries humans did not live long enough to manifest a meaningful incidence of thrombosis. Thrombophilia Poort et al. (1996) found that a common genetic 20210G-A transition in the 3-prime untranslated region of the prothrombin gene (Degen and Davie, 1987) was associated with elevated plasma prothrombin levels and an increased risk of venous thrombosis (THPH1; 188050). The SNP was found in 18% of probands of families with thrombosis, 6% of unselected consecutive patients with deep vein thrombosis, and 2% of healthy controls. Rosendaal et al. (1997) found that the mutation was associated with a 4-fold increased risk of myocardial infarction in women, while among men the risk was increased 1.5-fold (Doggen et al., 1998). Franco et al. (1999) found a frequency of the 20210A allele of 1% in a 400-member healthy control population and 2.7% in 263 patients with proven premature atherosclerotic disease. All heterozygotes in the patient group were found to have had a myocardial infarction. In addition, the data provided evidence for an association of the mutation with excessive thrombin generation, which may contribute to the understanding of its role in venous and arterial disease. Chamouard et al. (1999) studied the frequency of the factor II 20210G-A mutation in 10 white European patients with idiopathic portal vein thrombosis. They studied 5 women and 5 men; mean age was 50.4 years. The frequency of the 20210G-A mutation was found to be 40% in idiopathic portal vein thrombosis compared with 4.8% in controls or patients with nonidiopathic portal vein thrombosis or deep vein thrombosis. The frequency of the factor V Leiden mutation (612309.0001) was similar in subjects with portal vein thrombosis and in controls but was increased in patients with deep vein thrombosis. De Stefano et al. (1999) found that patients who were heterozygous for both factor V Leiden (1691G-A; 612309.0001) and prothrombin 20210G-A had a 2.6-fold higher risk of recurrent thrombosis than did carriers of factor V Leiden alone. Patients who were heterozygous for factor V Leiden had a risk of recurrent deep venous thrombosis that was similar to that among patients who had no known mutations in either factor II or factor V. In a Spanish family, Corral et al. (1999) identified 3 subjects homozygous for the 20210A prothrombin mutation who additionally were heterozygous for factor V Leiden. The combination of the 2 mutations increased the risk of developing venous thrombotic episodes at an earlier age. However, even in association with factor V Leiden, the homozygous condition of the 20210A prothrombin mutation required additional risk factors to induce a thrombotic event. Humpert et al. (1999) screened 384 type 1 diabetic patients for the 20210G-A prothrombin polymorphism and detected the variant in 9 patients. There was no increase in the incidence of coronary heart disease, nephropathy, or retinopathy among diabetic patients carrying the 20210G-A polymorphism. Meyer et al. (1999) described a method for simultaneously genotyping for factor V Leiden and the prothrombin 20210G-A variant by a multiplex PCR-SSCP assay on whole blood. Prohaska et al. (1999) studied 284 patients with angiographically confirmed coronary artery disease for the presence of the 20210G-A polymorphism of the prothrombin gene and compared them with 340 healthy controls. The prevalence of the mutation was similar in both groups. There was a mild increase in the frequency of the mutation in a group of 294 venous thrombosis patients compared with the healthy controls (odds ratio, 2.90; 95% CI, 1.25-6.9). One of the main factors of sudden hearing impairment, vestibular disturbance (tinnitus), is generally thought to be an acute labyrinthine ischemia; the most common mechanism of sudden hearing loss appears to be impaired cochlear blood circulation. Mercier et al. (1999) provided evidence that the 20210A allele of the prothrombin gene is a risk factor for perception deafness. Among 368 patients (median age, 41 years) with spontaneous deep vein thrombosis, 18 (12 women and 6 men, 38 to 69 years of age) had also suffered from acute unilateral hearing impairment. Six of the 18 were heterozygous for the 20210A allele. In a group of 395 nonthrombotic consecutive patients studied in the same laboratory for hemorrhagic symptoms or thrombocytopenia over the same period of time, 4 had acute unilateral perception deafness; of 395 nonthrombotic and nonhemorrhagic sex- and age-matched controls, 6 had acute unilateral perception deafness. Souto et al. (1999) reported a family illustrating the complexity of thrombotic disease in relation to the 20210A variant. The pedigree was ascertained through a proband with idiopathic thrombophilia. The family members who had a history of thromboembolism were heterozygous carriers of the 20210A variant. In addition, 4 relatives who were heterozygous as well as 2 who were homozygous for the 20210A allele failed to show clinical manifestations. The 2 homozygotes were 51 and 19 years old. Gehring et al. (2001) demonstrated that the 20210G-A mutation does not affect the amount of pre-mRNA, the site of 3-prime end cleavage, or the length of poly(A) tail of the mature mRNA. Rather, Gehring et al. (2001) demonstrated that the physiologic F2 3-prime end cleavage signal is inefficient and that F2 20210G-A represents a gain-of-function mutation, causing increased cleavage site recognition, increased 3-prime end processing, and increased mRNA accumulation and protein synthesis. Enhanced mRNA 3-prime end formation efficiency emerges as a novel principle causing a genetic disorder and explains the role of the F2 20210G-A mutation in the pathogenesis of thrombophilia. Gehring et al. (2001) concluded that their work illustrates the pathophysiologic importance of quantitatively minor aberrations of RNA metabolism. Although the 20210G-A mutation in heterozygous state carries an increased risk of a first venous thromboembolic episode, De Stefano et al. (2001) found that the risk of spontaneous recurrent venous thromboembolism was similar to that in patients with normal genotype. They concluded that carriers of the prothrombin mutation should be treated with oral anticoagulants after a first deep venous thrombosis for a similar length of time as patients with a normal genotype. Laczika et al. (2002) described a 19-year-old woman with the joint occurrence of type I antithrombin III deficiency (613118) and a heterozygous prothrombin 20210G-A mutation, who developed chronic thromboembolic pulmonary hypertension on the basis of total occlusion of the right pulmonary artery. Pulmonary vascular patency was restored successfully by surgical pulmonary thromboendarterectomy performed 24 weeks after the initial clinical presentation. Segal et al. (2009) provided a metaanalysis of the predictive value of the prothrombin 20210G-A mutation for venous thromboembolism using a literature review of 10 relevant articles. Although heterozygosity for prothrombin 20210G-A in probands conferred a risk of 1.45, the confidence interval ranged from 0.96 to 2.2, suggesting that the mutation was not predictive of recurrent venous thromboembolism compared to those without the mutation. In addition, there was insufficient evidence regarding the predictive value of homozygosity for prothrombin 20210G-A in probands, and for the predictive value of being a mutation carrier in relatives of probands with the mutation. It remained unknown whether testing improved clinical outcomes. Segal et al. (2009) concluded that there is insufficient evidence to support the hypothesis that 20210G-A confers a significantly increased risk for venous thromboembolism in terms of genetic testing. Ischemic Stroke In a comprehensive metaanalysis of 19 case-control studies including 3,028 white adult patients, Casas et al. (2004) found a statistically significant association between ischemic stroke (601367) and the 20210G-A substitution (odds ratio of 1.44). Budd-Chiari Syndrome In a 37-year-old Caucasian male with polycythemia vera who had developed Budd-Chiari syndrome (BDCHS; 600880), Bucciarelli et al. (1998) identified heterozygosity for the 20210G-A substitution. His paternal grandmother had died at the age of 60 due to BDCHS, and his father, who was also heterozygous for the mutation, had had a myocardial infarction at age 55. Bucciarelli et al. (1998) excluded deficiencies of antithrombin, protein C, and protein S, as well as the presence of antiphospholipid syndrome and the factor V Leiden mutation. They suggested case-control studies to establish if carriers of the 20210G-A mutation have an increased risk of developing BDCHS. Oner et al. (1999) described Budd-Chiari syndrome in a patient heterozygous for both the 20210G-A mutation of F2 and the factor V Leiden mutation; heterozygosity for the factor V Leiden mutation is a known susceptibility factor for BDCHS. Oner et al. (1999) referred to the 20210G-A mutation by the abbreviation PM, presumably for 'prothrombin mutation.' Susceptibility to Recurrent Pregnancy Loss Pihusch et al. (2001) studied clotting factors in 102 patients with 2 or more consecutive spontaneous abortions (RPRGL2; 614390) compared to 128 women without miscarriage and found that heterozygosity for the 20210G-A mutation of prothrombin was more common in patients with abortions in the first trimester (p = 0.027; odds ratio, 8.5). (less)
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risk factor
(Jan 06, 2020)
N
Not contributing to aggregate classification
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no assertion criteria provided
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Hereditary factor II deficiency disease |
Reproductive Health Research and Development, BGI Genomics
Accession: SCV001142420.1
First in ClinVar: Jan 12, 2020 Last updated: Jan 12, 2020 |
Comment:
show
NM_000506.3:c.*97G>A was reported as 20210G>A in previous publications. NM_000506.3:c.*97G>A in the F2 gene has an allele frequency of 0.012 in European (non-Finnish) subpopulation in the gnomAD database. This variant is a common variant associated with prothrombin-related thrombophilia (PMID: 9569177, 20301327). Heterozygosity for this variant is associated with increased prothrombin levels, and a 2- to 4-fold increased risk of venous thrombosis over the baseline population (PMID: 19289024). Rosendaal et al. (1997) found that the mutation was associated with a 4-fold increased risk of myocardial infarction in women, while among men the risk was increased 1.5-fold (PMID: 9569177). For these reasons, this variant has been classified as At-risk. Taken together, we interprete this variant as a risk factor. (less)
Observation: 1
Collection method: curation
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: curation
Allele origin: germline
Affected status: unknown
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Established risk allele
(-)
N
Not contributing to aggregate classification
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no assertion criteria provided
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Thrombophilia caused by F2 prothrombin deficiency
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Department of Pathology and Laboratory Medicine, Sinai Health System
Accession: SCV002764637.1
First in ClinVar: Dec 24, 2022 Last updated: Dec 24, 2022 |
Comment:
show
The F2 3' UTR c.*97G>A variant was identified in dbSNP (rs1799963) and Clinvar (classified as pathogenic by Counsyl and Mendelics in relation to venous thrombosis; mixed predictions of pathogenicity in association with congenital prothrombin deficiency). The F2 3' UTR c.*97G>A variant, historically called the prothrombin 20210G>A variant, is associated with increased prothrombin levels in the heterozygous state and has been found to be associated with a 2- to 3-fold increased risk of venous thrombosis over the baseline population (Foy_2009_19289024; Ho_2006_16606808). However, the estimated population attributable risk of recurrence for venous thromboembolism is modest (approximately 6.7%; 5% CI, 3.4-9.9%) and likely does not warrant extended anticoagulation treatment (Ho_2006_16606808). The prothrombin 20210G>A variant disrupts the F2 cleavage signal within the 3' UTR, causing increased cleavage site recognition and subsequently increased 3' end processing, mRNA accumulation, protein synthesis, and ultimately elevated plasma prothrombin concentrations (Gehring_2001_11443298). The variant was identified in control databases in 265 of 31396 chromosomes (1 homozygous) at a frequency of 0.8441%, and was observed at the highest frequency in the Latino population in 15 of 848 chromosomes (freq: 0.01769) (Genome Aggregation Database March 6, 2019, v2.1.1). The The F2 3' UTR c.*97G>A variant is not conserved in mammals. In silico predictions predicting the impact of the The F2 3' UTR c.*97G>A variant to the protein are not available. In summary, based on the above information this variant meets our laboratory's criteria to be classified as pathogenic. (less)
Observation: 1
Collection method: research
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: research
Allele origin: unknown
Affected status: unknown
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Pathogenic
(-)
N
Not contributing to aggregate classification
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no assertion criteria provided
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Congenital prothrombin deficiency |
Department of Pathology and Laboratory Medicine, Sinai Health System
Additional submitter:
Franklin by Genoox
Study: The Canadian Open Genetics Repository (COGR)
Accession: SCV001552413.2 First in ClinVar: Apr 13, 2021 Last updated: Dec 24, 2022 |
Comment:
show
The F2 3' UTR c.*97G>A variant was identified in dbSNP (rs1799963) and Clinvar (classified as pathogenic by Counsyl and Mendelics in relation to venous thrombosis; mixed predictions of pathogenicity in association with congenital prothrombin deficiency). The F2 3' UTR c.*97G>A variant, historically called the prothrombin 20210G>A variant, is associated with increased prothrombin levels in the heterozygous state and has been found to be associated with a 2- to 3-fold increased risk of venous thrombosis over the baseline population (Foy_2009_19289024; Ho_2006_16606808). However, the estimated population attributable risk of recurrence for venous thromboembolism is modest (approximately 6.7%; 5% CI, 3.4-9.9%) and likely does not warrant extended anticoagulation treatment (Ho_2006_16606808). The prothrombin 20210G>A variant disrupts the F2 cleavage signal within the 3' UTR, causing increased cleavage site recognition and subsequently increased 3' end processing, mRNA accumulation, protein synthesis, and ultimately elevated plasma prothrombin concentrations (Gehring_2001_11443298). The variant was identified in control databases in 265 of 31396 chromosomes (1 homozygous) at a frequency of 0.8441%, and was observed at the highest frequency in the Latino population in 15 of 848 chromosomes (freq: 0.01769) (Genome Aggregation Database March 6, 2019, v2.1.1). The The F2 3' UTR c.*97G>A variant is not conserved in mammals. In silico predictions predicting the impact of the The F2 3' UTR c.*97G>A variant to the protein are not available. In summary, based on the above information this variant meets our laboratory's criteria to be classified as pathogenic. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
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Pathogenic
(Aug 10, 2015)
N
Not contributing to aggregate classification
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no assertion criteria provided
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Thrombophilia due to thrombin defect |
Counsyl
Accession: SCV000677907.2
First in ClinVar: Sep 04, 2016 Last updated: Jun 29, 2025 |
Comment:
show
This submission and the accompanying classification are no longer maintained by the submitter. For more information on current observations and classification, please contact variantquestions@myriad.com. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: unknown
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not provided
(-)
N
Not contributing to aggregate classification
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no classification provided
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Thrombophilia due to thrombin defect |
GeneReviews
Accession: SCV002058094.2
First in ClinVar: Jan 14, 2022 Last updated: Oct 01, 2022 |
Observation: 1
Collection method: literature only
Allele origin: germline
Affected status: unknown
Observation 1
Collection method: literature only
Allele origin: germline
Affected status: unknown
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Uncertain significance
(Jun 21, 2019)
N
Not contributing to aggregate classification
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Flagged submission
flagged submission
Reason: Unnecessary conflicting claim for distinct condition when other classifications are more relevant
Source: ClinGen
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Pregnancy loss, recurrent, susceptibility to, 2 |
Centre for Mendelian Genomics, University Medical Centre Ljubljana
Accession: SCV001368932.2
First in ClinVar: Jul 04, 2020 Last updated: Dec 12, 2020 |
Comment:
show
This variant was classified as: Uncertain significance. The available evidence on this variant's pathogenicity is insufficient or conflicting. The following ACMG criteria were applied in classifying this variant: PS1. (less)
Observation: 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
Observation 1
Collection method: clinical testing
Allele origin: unknown
Affected status: yes
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| Flagged submissions do not contribute to the aggregate classification or review status for the variant. Learn more | |||||
Citations for germline classification of this variant
Help| Title | Author | Journal | Year | Link |
|---|---|---|---|---|
| Venous thromboembolism laboratory testing (factor V Leiden and factor II c.∗97G>A), 2025 revision: A technical standard of the American College of Medical Genetics and Genomics (ACMG). | Kang BE | Genetics in medicine : official journal of the American College of Medical Genetics | 2025 | PMID: 40616445 |
| Venous thromboembolism risk in adults with hereditary thrombophilia: a systematic review and meta-analysis. | Alnor AB | Annals of hematology | 2024 | PMID: 39167180 |
| Thrombosis risk in single- and double-heterozygous carriers of factor V Leiden and prothrombin G20210A in FinnGen and the UK Biobank. | Ryu J | Blood | 2024 | PMID: 38498041 |
| GoldVariants, a resource for sharing rare genetic variants detected in bleeding, thrombotic, and platelet disorders: Communication from the ISTH SSC Subcommittee on Genomics in Thrombosis and Hemostasis. | Megy K | Journal of thrombosis and haemostasis : JTH | 2021 | PMID: 34355501 |
| Epidemiology and Genetics of Venous Thromboembolism and Chronic Venous Disease. | Baylis RA | Circulation research | 2021 | PMID: 34110897 |
| Prothrombin Thrombophilia. | Adam MP | - | 2021 | PMID: 20301327 |
| Venous thromboembolism laboratory testing (factor V Leiden and factor II c.*97G>A), 2018 update: a technical standard of the American College of Medical Genetics and Genomics (ACMG). | Zhang S | Genetics in medicine : official journal of the American College of Medical Genetics | 2018 | PMID: 30297698 |
| Clinical significance of prothrombin G20210A mutation in homozygous patients. | Shemesh A | American journal of hematology | 2017 | PMID: 28707429 |
| Prevalence and Geographical Variation of Prothrombin G20210A Mutation in Patients with Cerebral Vein Thrombosis: A Systematic Review and Meta-Analysis. | Gonzalez JV | PloS one | 2016 | PMID: 27031503 |
| A mutation in the HFE gene is associated with altered brain iron profiles and increased oxidative stress in mice. | Nandar W | Biochimica et biophysica acta | 2013 | PMID: 23429074 |
| Mutant HFE H63D protein is associated with prolonged endoplasmic reticulum stress and increased neuronal vulnerability. | Liu Y | The Journal of biological chemistry | 2011 | PMID: 21349849 |
| Effect of HFE variants on sphingolipid expression by SH-SY5Y human neuroblastoma cells. | Ali-Rahmani F | Neurochemical research | 2011 | PMID: 21243428 |
| HFE polymorphisms affect cellular glutamate regulation. | Mitchell RM | Neurobiology of aging | 2011 | PMID: 19560233 |
| A potential regulatory role for mRNA secondary structures within the prothrombin 3'UTR. | Liu X | Thrombosis research | 2010 | PMID: 20553951 |
| The genetics of venous thromboembolism. A meta-analysis involving approximately 120,000 cases and 180,000 controls. | Gohil R | Thrombosis and haemostasis | 2009 | PMID: 19652888 |
| HFE C282Y/H63D compound heterozygotes are at low risk of hemochromatosis-related morbidity. | Gurrin LC | Hepatology (Baltimore, Md.) | 2009 | PMID: 19554541 |
| Predictive value of factor V Leiden and prothrombin G20210A in adults with venous thromboembolism and in family members of those with a mutation: a systematic review. | Segal JB | JAMA | 2009 | PMID: 19531787 |
| Thrombophilia: 2009 update. | Foy P | Current treatment options in cardiovascular medicine | 2009 | PMID: 19289024 |
| Genetic screening for HFE hemochromatosis in 6,020 Danish men: penetrance of C282Y, H63D, and S65C variants. | Pedersen P | Annals of hematology | 2009 | PMID: 19159930 |
| Risk of recurrent venous thromboembolism in patients with common thrombophilia: a systematic review. | Ho WK | Archives of internal medicine | 2006 | PMID: 16606808 |
| Prothrombin 20210G>A is an ancestral prothrombotic mutation that occurred in whites approximately 24,000 years ago. | Zivelin A | Blood | 2006 | PMID: 16493002 |
| Meta-analysis of genetic studies in ischemic stroke: thirty-two genes involving approximately 18,000 cases and 58,000 controls. | Casas JP | Archives of neurology | 2004 | PMID: 15534175 |
| The prothrombin 3'end formation signal reveals a unique architecture that is sensitive to thrombophilic gain-of-function mutations. | Danckwardt S | Blood | 2004 | PMID: 15059842 |
| G20210A is a functional mutation in the prothrombin gene; effect on protein levels and 3'-end formation. | Ceelie H | Journal of thrombosis and haemostasis : JTH | 2004 | PMID: 14717975 |
| Prothrombin G20210A is a bifunctional gene polymorphism. | Carter AM | Thrombosis and haemostasis | 2002 | PMID: 12038788 |
| Co-selection of the H63D mutation and the HLA-A29 allele: a new paradigm of linkage disequilibrium? | Cardoso CS | Immunogenetics | 2002 | PMID: 11904676 |
| A population-based study of the biochemical and clinical expression of the H63D hemochromatosis mutation. | Gochee PA | Gastroenterology | 2002 | PMID: 11874997 |
| Unilateral chronic thromboembolic pulmonary disease associated with combined inherited thrombophilia. | Laczika K | Chest | 2002 | PMID: 11796466 |
| Thrombophilic gene mutations and recurrent spontaneous abortion: prothrombin mutation increases the risk in the first trimester. | Pihusch R | American journal of reproductive immunology (New York, N.Y. : 1989) | 2001 | PMID: 11506076 |
| Increased efficiency of mRNA 3' end formation: a new genetic mechanism contributing to hereditary thrombophilia. | Gehring NH | Nature genetics | 2001 | PMID: 11443298 |
| Variable phenotypic presentation of iron overload in H63D homozygotes: are genetic modifiers the cause? | Aguilar-Martinez P | Gut | 2001 | PMID: 11358905 |
| Linkage analysis demonstrates that the prothrombin G20210A mutation jointly influences plasma prothrombin levels and risk of thrombosis. | Soria JM | Blood | 2000 | PMID: 10779421 |
| Budd-Chiari syndrome in a patient heterozygous for both factor V Leiden and the G20210A mutation on the prothrombin gene. | Oner AF | Thrombosis and haemostasis | 1999 | PMID: 10544935 |
| The risk of recurrent deep venous thrombosis among heterozygous carriers of both factor V Leiden and the G20210A prothrombin mutation. | De Stefano V | The New England journal of medicine | 1999 | PMID: 10477778 |
| Homozygotes for prothrombin gene 20210 A allele in a thrombophilic family without clinical manifestations of venous thromboembolism. | Souto JC | Haematologica | 1999 | PMID: 10406905 |
| The 20210 G to A prothrombin polymorphism and late complications in type 1 diabetes mellitus. | Humpert PM | Thrombosis and haemostasis | 1999 | PMID: 10348712 |
| Simultaneous genotyping for factor V Leiden and prothrombin G20210A variant by a multiplex PCR-SSCP assay on whole blood. | Meyer M | Thrombosis and haemostasis | 1999 | PMID: 10348711 |
| The prevalence of the prothrombin 20210 G-->A mutation is not increased in angiographically confirmed coronary artery disease. | Prohaska W | Thrombosis and haemostasis | 1999 | PMID: 10348710 |
| The 20210A allele of the prothrombin gene is an independent risk factor for perception deafness in patients with venous thromboembolic antecedents. | Mercier E | Blood | 1999 | PMID: 10336270 |
| Born to clot: the European burden. | Rees DC | British journal of haematology | 1999 | PMID: 10233439 |
| Clinical and analytical relevance of the combination of prothrombin 20210A/A and factor V Leiden: results from a large family. | Corral J | British journal of haematology | 1999 | PMID: 10233438 |
| The 20210 G-->A mutation in the 3'-untranslated region of the prothrombin gene and the risk for arterial thrombotic disease. | Franco RF | British journal of haematology | 1999 | PMID: 10027711 |
| Frequent factor II G20210A mutation in idiopathic portal vein thrombosis. | Chamouard P | Gastroenterology | 1999 | PMID: 9869612 |
| Prothrombin antigen levels in symptomatic and asymptomatic carriers of the 20210A prothrombin variant. | Simioni P | British journal of haematology | 1998 | PMID: 9886317 |
| A single genetic origin for the common prothrombotic G20210A polymorphism in the prothrombin gene. | Zivelin A | Blood | 1998 | PMID: 9694698 |
| Geographic distribution of the 20210 G to A prothrombin variant. | Rosendaal FR | Thrombosis and haemostasis | 1998 | PMID: 9569177 |
| Interaction of coagulation defects and cardiovascular risk factors: increased risk of myocardial infarction associated with factor V Leiden or prothrombin 20210A. | Doggen CJ | Circulation | 1998 | PMID: 9531249 |
| Budd-Chiari syndrome in a patient heterozygous for the G20210A mutation of the prothrombin gene. | Bucciarelli P | Thrombosis and haemostasis | 1998 | PMID: 9493607 |
| A simple genetic test identifies 90% of UK patients with haemochromatosis. The UK Haemochromatosis Consortium. | The U | Gut | 1997 | PMID: 9462220 |
| A common prothrombin variant (20210 G to A) increases the risk of myocardial infarction in young women. | Rosendaal FR | Blood | 1997 | PMID: 9292507 |
| Mutation analysis of the HLA-H gene in Italian hemochromatosis patients. | Carella M | American journal of human genetics | 1997 | PMID: 9106528 |
| A common genetic variation in the 3'-untranslated region of the prothrombin gene is associated with elevated plasma prothrombin levels and an increase in venous thrombosis. | Poort SR | Blood | 1996 | PMID: 8916933 |
| Haemochromatosis and HLA-H. | Jouanolle AM | Nature genetics | 1996 | PMID: 8896550 |
| A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis. | Feder JN | Nature genetics | 1996 | PMID: 8696333 |
| Characterization of the cDNA coding for mouse prothrombin and localization of the gene on mouse chromosome 2. | Degen SJ | DNA and cell biology | 1990 | PMID: 2222810 |
| Nucleotide sequence of the gene for human prothrombin. | Degen SJ | Biochemistry | 1987 | PMID: 2825773 |
| Can maximum ouabain-sensitive 86Rb+ uptake rate be obtained by increasing Na+ influx? | Kennedy RH | European journal of pharmacology | 1986 | PMID: 2429850 |
| Characterization of the complementary deoxyribonucleic acid and gene coding for human prothrombin. | Degen SJ | Biochemistry | 1983 | PMID: 6305407 |
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Text-mined citations for rs1799963 ...
HelpRecord last updated Jul 06, 2026
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.
